Evidence map›Paper›PMID 30339177›Full record

ArticleThe American journal of clinical nutrition2018

The 677C→T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.

Barry Shane, Faith Pangilinan, James L Mills, Ruzong Fan, Tingting Gong, Cheryl D Cropp, Yoonhee Kim, Per M Ueland, Joan E Bailey-Wilson, Alexander F Wilson and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of clinical nutrition, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. The Interrelationship between Preconception Folate Nutritional Intake and Child Genetic Liability in the Risk of Childhood Acute Lymphoblastic Leukemia.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Article
  7. Folate intake,The British journal of nutrition · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Scientific opinion on the tolerable upper intake level for folate.EFSA journal. European Food Safety Authority · 2023
    Article
  13. Article
  14. Can Pharmacogenetic Variants inInternational journal of molecular sciences · 2023
    Article
  15. Article
  16. Genetic polymorphism inSkin health and disease · 2022
    Article
  17. Observational
  18. Article
  19. Methylenetetrahydrofolate Reductase GeneFrontiers in cardiovascular medicine · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Barry ShaneDepartment of Nutritional Sciences and Toxicology, University of California, Berkeley, CA.
Faith PangilinanMedical Genomics and Metabolic Genetics Branch, National Human Genome Research Institute, Bethesda, MD.
James L MillsDivision of Intramural Population Health Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD.
Ruzong FanDepartment of Biostatistics, Bioinformatics, and Biomathematics, Georgetown University Medical Center (GUMC), Washington, DC.
Tingting GongDepartment of Biostatistics, Bioinformatics, and Biomathematics, Georgetown University Medical Center (GUMC), Washington, DC.
Cheryl D CroppComputational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD.
Yoonhee KimComputational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD.
Per M UelandDepartment of Clinical Science, University of Bergen and Haukeland University Hospital, Bergen, Norway.
Joan E Bailey-WilsonComputational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD.
Alexander F WilsonComputational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD.
Lawrence C BrodyMedical Genomics and Metabolic Genetics Branch, National Human Genome Research Institute, Bethesda, MD.
Anne M MolloyDepartment of Clinical Medicine, School of Medicine, Trinity College Dublin, Dublin, Ireland.
National Human Genome Research Institute · USGeorgetown University · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USHaukeland University Hospital · NOTrinity College Dublin · IEUniversity of California, Berkeley · US

Funding

Genometric analysis of quantitative traitsZIAHG000200 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI WILSON, ALEXANDER F · 2009 to 2020
$19.8M
The contribution folate and vitamin B12 genes to disease.ZIAHG000167 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BRODY, LAWRENCE C · 2009 to 2025
$17.6M
Genetic Epidemiology of Complex TraitsZIAHG200327 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2009 to 2022
$10.5M
NICHD Health Research Board Of Ireland Neural Tube Defects StudyZIAHD002502 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MILLS, JAMES · 2009 to 2022
$2.9M
FOLATE AND NEURAL TUBE DEFECTS-275033348N01HD033348 · NICHD · THE HEALTH RESEARCH BOARD · 2003 to 2004
–
NICHD NIH HHS N01 HD033348
6 · The paper itself

Abstract

Background: Genetic polymorphisms can explain some of the population- and individual-based variations in nutritional status biomarkers. Objective: We sought to screen the entire human genome for common genetic polymorphisms that influence folate-status biomarkers in healthy individuals. Design: We carried out candidate gene analyses and genome-wide association scans in 2232 young, healthy Irish subjects to evaluate which common genetic polymorphisms influence red blood cell folate, serum folate, and plasma total homocysteine. Results: The 5,10-methylenetetrahydrofolate reductase (MTHFR) 677C→T (rs1801133) variant was the major genetic modifier of all 3 folate-related biomarkers in this Irish population and reached genome-wide significance for red blood cell folate (P = 1.37 × 10-17), serum folate (P = 2.82 × 10-11), and plasma total homocysteine (P = 1.26 × 10-19) concentrations. A second polymorphism in the MTHFR gene (rs3753584, P = 1.09 × 10-11) was the only additional MTHFR variant to exhibit any significant independent effect on red blood cell folate. Other MTHFR variants, including the 1298A→C variant (rs1801131), appeared to reach genome-wide significance, but these variants shared linkage disequilibrium with MTHFR 677C→T and were not significant when analyzed in MTHFR 677CC homozygotes. No additional non-MTHFR modifiers of red blood cell or plasma folate were detected. Two additional genome-wide significant modifiers of plasma homocysteine were found in the region of the dipeptidase 1 (DPEP1) gene on chromosome 16 and the Twist neighbor B (TWISTNB) gene on chromosome 7. Conclusions: The MTHFR 677C→T variant is the predominant genetic modifier of folate status biomarkers in this healthy Irish population. It is not necessary to determine MTHFR 677C→T genotype to evaluate folate status because its effect is reflected in concentrations of standard folate biomarkers. The MTHFR 1298A→C variant had no independent effect on folate status biomarkers. To our knowledge, this is the first genome-wide association study report on red blood cell folate and the first report of an association between homocysteine and TWISTNB.

Indexed as

AdolescentAdultBiomarkersErythrocytesFemaleFolic AcidGenome-Wide Association StudyGenotypeHomocysteineHumansIrelandLinkage DisequilibriumMaleMethylenetetrahydrofolate Reductase (NADPH2)Nutritional StatusPolymorphism, Single NucleotideBiomarkersFolic AcidHomocysteineMethylenetetrahydrofolate Reductase (NADPH2)

Identifiers

PMID30339177
PMCPMC6290363
OpenAlexW2896232842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.