Evidence map›Paper›PMID 30339002›Full record

ArticleEnvironmental science & technology2019

Modeling of Contaminant Biodegradation and Compound-Specific Isotope Fractionation in Chemostats at Low Dilution Rates.

Mehdi Gharasoo, Benno N Ehrl, Olaf A Cirpka, Martin Elsner

Open access · bronzeAbstract read
In one paragraph

Article in Environmental science & technology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Mehdi GharasooTechnical University of Munich , Chair of Analytical Chemistry and Water Chemistry , Marchioninistrasse 17 , 81377 Munich , Germany.
Benno N EhrlHelmholtz Zentrum München , Institute of Groundwater Ecology , Ingolstädter Landstrasse 1 , 85764 Neuherberg , Germany.
Olaf A CirpkaUniversity of Tubingen , Center for Applied Geoscience , Hölderlinstrasse 12 , 72074 Tübingen , Germany.ORCID 0000-0003-3509-4118
Martin ElsnerTechnical University of Munich , Chair of Analytical Chemistry and Water Chemistry , Marchioninistrasse 17 , 81377 Munich , Germany.ORCID 0000-0003-4746-9052
Helmholtz Zentrum München · DEUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a framework to model microbial transformations in chemostats and retentostats under transient or quasi-steady state conditions. The model accounts for transformation-induced isotope fractionation and mass-transfer across the cell membrane. It also verifies that the isotope fractionation ϵ can be evaluated as the difference of substrate-specific isotope ratios between inflow and outflow. We explicitly considered that the dropwise feeding of substrate into the reactor at very low dilution rates leads to transient behavior of concentrations and transformation rates and use this information to validate conditions under which a quasi-steady state treatment is justified. We demonstrate the practicality of the code by modeling a chemostat experiment of atrazine degradation at low dilution/growth rates by the strain Arthrobacter aurescens TC1. Our results shed light on the interplay of processes that control biodegradation and isotope fractionation of contaminants at low (μg/L) concentration levels. With the help of the model, an estimate of the mass-transfer coefficient of atrazine through the cell membrane was achieved (0.0025 s

Indexed as

ArthrobacterAtrazineBiodegradation, EnvironmentalCarbon IsotopesChemical FractionationIsotopesAtrazineCarbon IsotopesIsotopes

Identifiers

PMID30339002
PMCPMC6986770
OpenAlexW2897039722

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.