Evidence map›Paper›PMID 30338759›Full record

ArticleeLife2018

Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.

Nicholas Chim, Lynnette N Jackson, Anh M Trinh, John C Chaput

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Molecular Characterization of a DNA Polymerase fromInternational journal of molecular sciences · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. In Vitro Selection of an ATP-Binding TNA Aptamer.Molecules (Basel, Switzerland) · 2020
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nicholas Chim *Departments of Pharmaceutical Sciences, University of California, Irvine, California.ORCID 0000-0003-2274-5305
Lynnette N Jackson *Departments of Pharmaceutical Sciences, University of California, Irvine, California.
Anh M TrinhDepartments of Pharmaceutical Sciences, University of California, Irvine, California.
John C ChaputDepartments of Pharmaceutical Sciences, University of California, Irvine, California.ORCID 0000-0003-1393-135X

Funding

MINORITY BIOMEDICAL RESEARCHERS PROGRAMR25GM055246 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOTA-BRAVO, LUIS M · 1996 to 2022
$15.3M
MARC U*STAR at the University of California, IrvineT34GM069337 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BUCHMEIER, MICHAEL JOSEPH, DE LA CRUZ, MARLENE · 2005 to 2019
$8.2M
NIGMS NIH HHS R25 GM055246NIGMS NIH HHS T34 GM069337NIH HHS R25GM055246
6 · The paper itself

Abstract

High resolution crystal structures of DNA polymerase intermediates are needed to study the mechanism of DNA synthesis in cells. Here we report five crystal structures of DNA polymerase I that capture new conformations for the polymerase translocation and nucleotide pre-insertion steps in the DNA synthesis pathway. We suggest that these new structures, along with previously solved structures, highlight the dynamic nature of the finger subdomain in the enzyme active site.

Indexed as

BiocatalysisCatalytic DomainCrystallography, X-RayDNADNA Polymerase IEscherichia coliProtein ConformationDNADNA Polymerase Ibiochemistrychemical biologycrystallographyDNA polymeraseE. colimechanismmolecular biophysicsstructural biology

Identifiers

PMID30338759
PMCPMC6231770

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.