Evidence map›Paper›PMID 30338147›Full record

ArticleBiomedical optics express2018

High speed functional imaging with source localized multifocal two-photon microscopy.

Peter Quicke, Stephanie Reynolds, Mark Neil, Thomas Knöpfel, Simon R Schultz, Amanda J Foust

Abstract read
In one paragraph

Article in Biomedical optics express, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Neurophotonics · 2020
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Peter QuickeDepartment of Bioengineering, Imperial College London, SW7 2AZ, UK.
Stephanie ReynoldsDepartment of Electrical and Electronic Engineering, Imperial College London, SW7 2AZ, UK.
Mark NeilCentre for Neurotechnology, Imperial College London, SW7 2AZ, UK.
Thomas KnöpfelCentre for Neurotechnology, Imperial College London, SW7 2AZ, UK.
Simon R SchultzDepartment of Bioengineering, Imperial College London, SW7 2AZ, UK.
Amanda J FoustDepartment of Bioengineering, Imperial College London, SW7 2AZ, UK.

Funding

Near Infrared Genetically Encoded Voltage Indicators (NIR-GEVIs) for All-Optical Electrophysiology (AOE)U01NS099573 · NINDS · IMPERIAL COLLEGE OF SCIENCE, TECHNOLOGY AND MEDICINE · PI ANTIC, SRDJAN D, KNOPFEL, THOMAS · 2016 to 2018
$2.9M
Sparse, Strong and Large Area Targeting of Genetically Encoded IndicatorsU01MH109091 · NIMH · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI ANTIC, SRDJAN D, KNOPFEL, THOMAS · 2015 to 2017
$1.6M
Three Dimensional Holography for Parallel Multi-target Optogenetic Circuit ManipulationU01NS090501 · NINDS · PIERRE AND MARIE CURIE UNIVERSITY · PI EMILIANI, VALENTINA, PICAUD, SERGE · 2014 to 2016
$941k
NIMH NIH HHS U01 MH109091NINDS NIH HHS U01 NS090501NINDS NIH HHS U01 NS099573Wellcome Trust
6 · The paper itself

Abstract

Multifocal two-photon microscopy (MTPM) increases imaging speed over single-focus scanning by parallelizing fluorescence excitation. The imaged fluorescence's susceptibility to crosstalk, however, severely degrades contrast in scattering tissue. Here we present a source-localized MTPM scheme optimized for high speed functional fluorescence imaging in scattering mammalian brain tissue. A rastered line array of beamlets excites fluorescence imaged with a complementary metal-oxide-semiconductor (CMOS) camera. We mitigate scattering-induced crosstalk by temporally oversampling the rastered image, generating grouped images with structured illumination, and applying Richardson-Lucy deconvolution to reassign scattered photons. Single images are then retrieved with a maximum intensity projection through the deconvolved image groups. This method increased image contrast at depths up to 112 μm in scattering brain tissue and reduced functional crosstalk between pixels during neuronal calcium imaging. Source-localization did not affect signal-to-noise ratio (SNR) in densely labeled tissue under our experimental conditions. SNR decreased at low frame rates in sparsely labeled tissue, with no effect at frame rates above 50 Hz. Our non-descanned source-localized MTPM system enables high SNR, 100 Hz capture of fluorescence transients in scattering brain, increasing the scope of MTPM to faster and smaller functional signals.

Indexed as

(100.0100) Image processing(110.0110) Imaging systems(180.0180) Microscopy

Identifiers

PMID30338147
PMCPMC6191622

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.