ArticleFrontiers in plant science2018
The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice.
Article in Frontiers in plant science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
71 citing papers in PubMed, 128 citations in OpenAlex.
- Genome-wide association analysis of salinity tolerance-related loci in bread wheat (Triticum aestivum L.) at the germination stage.BMC plant biology · 2026Article
- Genome-wide association study reveals genomic regions associated withFrontiers in plant science · 2026Article
- Exploring the polygenic landscape of wool traits in Turkish merinos through multi-locus GWAS approaches: Karacabey Merino.BMC veterinary research · 2025Article
- Investigation of growth traits in Turkish Merino lambs using multi-locus GWAS approaches: Karacabey Merino.BMC veterinary research · 2025Article
- Development and Validation of Multi-Locus GWAS-Based KASP Markers for MaizePlants (Basel, Switzerland) · 2025Article
- Integration of GWAS and transcriptome and haplotype analyses to identify QTNs and candidate genes controlling oil content in soybean seeds.Scientific reports · 2025Article
- Molecular Alchemy: Converting Stress into Resilience via Secondary Metabolites and Calcium Signaling in Rice.Rice (New York, N.Y.) · 2025Review
- Multi-Experiment and Multi-Locus Genome-Wide Association Mapping for Grain Arsenic in Rice Population.Plant direct · 2025Article
- Discovery of host genetic factors through multi-locus GWAS against toxoplasmosis in sheep: addressing one health perspectives.BMC veterinary research · 2025Article
- Exploring the polygenic landscape of wool traits in Turkish Merinos through multi-locus GWAS approaches: middle Anatolian Merino.Scientific reports · 2025Article
- Ion homeostasis and coordinated salt tolerance mechanisms in a barley (Hordeum vulgare L.)doubled haploid line.BMC plant biology · 2025Article
- Genome-wide association study (GWAS) uncovers candidate genes linked to the germination performance of bread wheat (Triticum aestivum L.) under salt stress.BMC genomics · 2025Article
- Genome-wide association study of salt tolerance in sorghum during germination.Frontiers in plant science · 2025Article
- Multi-locus genome wide association study uncovers genetics of fresh seed dormancy in groundnut.BMC plant biology · 2024Article
- The genetic architecture of resistance to septoria tritici blotch in French wheat cultivars.BMC plant biology · 2024Article
- Investigation of growth traits in Turkish Merino lambs using multi-locus GWAS approaches: Middle Anatolian Merino.BMC veterinary research · 2024Article
- Genome-Wide Association for Morphological and Agronomic Traits inPlants (Basel, Switzerland) · 2024Article
- Genome-wide association study provides new insight into the underlying mechanism of drought tolerance during seed germination stage in soybean.Scientific reports · 2024Article
- Genetic dissection of green pod yield in dolichos bean, an orphan vegetable legume, using new molecular markers.Journal of applied genetics · 2024Article
- Discovering New QTNs and Candidate Genes Associated with Rice-Grain-Related Traits within a Collection of Northeast Core Set and Rice Landraces.Plants (Basel, Switzerland) · 2024Article
11 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Improving the salt-tolerance of direct-seeding rice at the seed germination stage is a major goal of breeders. Efficiently identifying salt tolerance loci will help researchers develop effective rice breeding strategies. In this study, six multi-locus genome-wide association studies (GWAS) methods (mrMLM, FASTmrMLM, FASTmrEMMA, pLARmEB, pKWmEB, and ISIS EM-BLASSO) were applied to identify quantitative trait nucleotides (QTNs) for the salt tolerance traits of 478 rice accessions with 162,529 SNPs at the seed germination stage. Among the 371 QTNs detected by the six methods, 56 were identified by at least three methods. Among these 56 QTNs, 12, 6, 7, 4, 13, 12, and 12 were found to be associated with SSI-GI, SSI-VI, SSI-MGT, SSI-IR-24h, SSI-IR-48h, SSI-GR-5d, and SSI-GR-10d, respectively. Additionally, 66 candidate genes were identified in the vicinity of the 56 QTNs, and two of these genes (LOC_Os01g45760 and LOC_Os10g04860) are involved in auxin biosynthesis according to the enriched GO terms and KEGG pathways. This information will be useful for identifying the genes responsible for rice salt tolerance. A comparison of the six methods revealed that ISIS EM-BLASSO identified the most co-detected QTNs and performed best, with the smallest residual errors and highest computing speed, followed by FASTmrMLM, pLARmEB, mrMLM, pKWmEB, and FASTmrEMMA. Although multi-locus GWAS methods are superior to single-locus GWAS methods, their utility for identifying QTNs may be enhanced by adding a bin analysis to the models or by developing a hybrid method that merges the results from different methods.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.