Evidence map›Paper›PMID 30337679›Full record

ArticleScientific reports2018

In silico proteomic and phylogenetic analysis of the outer membrane protein repertoire of gastric Helicobacter species.

Eva Bauwens, Myrthe Joosten, Joemar Taganna, Mirko Rossi, Ayla Debraekeleer, Alfred Tay, Fanny Peters, Steffen Backert, James Fox, Richard Ducatelle and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 43 citations in OpenAlex.

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  6. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
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  7. Review
  8. Helicobacter pylori: an up-to-date overview on the virulence and pathogenesis mechanisms.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
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  11. Genome-wide identification of theFrontiers in plant science · 2022
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  12. Pharmaceutical, food potential, and molecular data ofGenetic resources and crop evolution · 2022
    Review
  13. An Overview ofMicroorganisms · 2021
    Review
  14. Adhesion ofFrontiers in molecular biosciences · 2021
    Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 5 countries.

Eva BauwensDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.
Myrthe JoostenDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.
Joemar TagannaLaboratory of Structural and Molecular Microbiology, Structural Biology Research Center, Flemish Institute for Biotechnology (VIB), Brussels, Belgium.
Mirko RossiDepartment of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland.
Ayla DebraekeleerLaboratory of Structural and Molecular Microbiology, Structural Biology Research Center, Flemish Institute for Biotechnology (VIB), Brussels, Belgium.
Alfred TayThe Marshall Centre for Infectious Diseases Research and Training, School of Pathology and Laboratory Medicine, University of Western Australia, Nedlands, Perth, Western Australia, Australia.
Fanny PetersThe Marshall Centre for Infectious Diseases Research and Training, School of Pathology and Laboratory Medicine, University of Western Australia, Nedlands, Perth, Western Australia, Australia.ORCID http://orcid.org/0000-0002-0920-1031
Steffen BackertUniversity Erlangen Nürnberg, Department Biology, Division Microbiology, Erlangen, Germany.
James FoxDivision of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-9307-6116
Richard DucatelleDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.
Han RemautLaboratory of Structural and Molecular Microbiology, Structural Biology Research Center, Flemish Institute for Biotechnology (VIB), Brussels, Belgium.
Freddy HaesebrouckDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium. freddy.haesebrouck@ugent.be.ORCID http://orcid.org/0000-0002-1709-933X
Annemieke SmetDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.ORCID http://orcid.org/0000-0002-1271-6191
Ghent University · BEVIB-VUB Center for Structural Biology · BEThe University of Western Australia · AUFriedrich-Alexander-Universität Erlangen-Nürnberg · DEMassachusetts Institute of Technology · USUniversity of Antwerp · BEUniversity of Helsinki · FI

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 1985 to 2020
$25.6M
Biomedical Research Training for Veterinary ScientistsT32OD010978 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOX, JAMES G · 2012 to 2017
$2.2M
Diagnosis and Pathobiology of Emerging Enterohepatic Helicobacter spp. in MiceR01OD011141 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FOX, JAMES G · 2012 to 2014
$1.2M
NIEHS NIH HHS P30 ES002109NIH HHS R01 OD011141NIH HHS T32 OD010978
6 · The paper itself

Abstract

Helicobacter (H.) pylori is an important risk factor for gastric malignancies worldwide. Its outer membrane proteome takes an important role in colonization of the human gastric mucosa. However, in zoonotic non-H. pylori helicobacters (NHPHs) also associated with human gastric disease, the composition of the outer membrane (OM) proteome and its relative contribution to disease remain largely unknown. By means of a comprehensive survey of the diversity and distribution of predicted outer membrane proteins (OMPs) identified in all known gastric Helicobacter species with fully annotated genome sequences, we found genus- and species-specific families known or thought to be implicated in virulence. Hop adhesins, part of the Helicobacter-specific family 13 (Hop, Hor and Hom) were restricted to the gastric species H. pylori, H. cetorum and H. acinonychis. Hof proteins (family 33) were putative adhesins with predicted Occ- or MOMP-family like 18-stranded β-barrels. They were found to be widespread amongst all gastric Helicobacter species only sporadically detected in enterohepatic Helicobacter species. These latter are other members within the genus Helicobacter, although ecologically and genetically distinct. LpxR, a lipopolysaccharide remodeling factor, was also detected in all gastric Helicobacter species but lacking as well from the enterohepatic species H. cinaedi, H. equorum and H. hepaticus. In conclusion, our systemic survey of Helicobacter OMPs points to species and infection-site specific members that are interesting candidates for future virulence and colonization studies.

Indexed as

Computer SimulationPhylogenyProteomicsBacterial Outer Membrane ProteinsHelicobacterBacterial Outer Membrane Proteins

Identifiers

PMID30337679
PMCPMC6194013
OpenAlexW2897388032

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.