Evidence map›Paper›PMID 30337605›Full record

ArticleScientific reports2018

MicroRNA induction by copy number gain is associated with poor outcome in squamous cell carcinoma of the lung.

Endi Xia, Sotaro Kanematsu, Yusuke Suenaga, Asmaa Elzawahry, Hitomi Kondo, Noriko Otsuka, Yasumitsu Moriya, Toshihiko Iizasa, Mamoru Kato, Ichiro Yoshino and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Endi XiaCancer Genome Center, Chiba Cancer Center Research Institute, Chiba, Japan.
Sotaro KanematsuDivision of Genetic Diagnostics, Chiba Cancer Center, Chiba, Japan.
Yusuke SuenagaCancer Genome Center, Chiba Cancer Center Research Institute, Chiba, Japan.
Asmaa ElzawahryDepartment of Bioinformatics, National Cancer Center, Tokyo, Japan.
Hitomi KondoDivision of Genetic Diagnostics, Chiba Cancer Center, Chiba, Japan.
Noriko OtsukaDivision of Genetic Diagnostics, Chiba Cancer Center, Chiba, Japan.
Yasumitsu MoriyaDivision of Thoracic Diseases, Chiba Cancer Center, Chiba, Japan.
Toshihiko IizasaDivision of Thoracic Diseases, Chiba Cancer Center, Chiba, Japan.
Mamoru KatoDepartment of Bioinformatics, National Cancer Center, Tokyo, Japan.
Ichiro YoshinoDepartment of General Thoracic Surgery, Graduate School of Medicine, Chiba University, Chiba, Japan.
Sana YokoiCancer Genome Center, Chiba Cancer Center Research Institute, Chiba, Japan. syokoi@chiba-cc.jp.
Chiba Cancer Center · JPChiba University · JPNational Cancer Centre Japan · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copy number gains in cancer genomes have been shown to induce oncogene expression and promote carcinogenesis; however, their role in regulating oncogenic microRNAs (onco-miRNAs) remains largely unknown. Our aim was to identify onco-miRNAs induced by copy number gains in human squamous cell carcinoma (Sq) of the lung. We performed a genome-wide screen of onco-miRNAs from 245 Sqs using data sets from RNA-sequencing, comparative genomic hybridization, and the corresponding clinical information from The Cancer Genome Atlas. Among 1001 miRNAs expressed in the samples, 231 were correlated with copy number alternations, with only 11 of these being highly expressed in Sq compared to adenocarcinoma and normal tissues. Notably, miR-296-5p, miR-324-3p, and miR-3928-3p expression was significantly associated with poor prognosis. Multivariate analysis using the Cox proportional hazards model showed that miRNA expression and smoking were independent prognostic factors and were associated with poor prognosis. Furthermore, the three onco-miRNAs inhibited FAM46C to induce MYC expression, promoting proliferation of Sq cells. We found that copy number gains in Sq of the lung induce onco-miRNA expression that is associated with poor prognosis.

Indexed as

DNA Copy Number VariationsGene Expression Regulation, NeoplasticAdultAgedAged, 80 and overBiomarkers, TumorCarcinoma, Squamous CellCase-Control StudiesCell ProliferationFemaleFollow-Up StudiesGene Expression ProfilingHumansLung NeoplasmsMaleMicroRNAsBiomarkers, TumorMicroRNAsMYC protein, humanNucleotidyltransferasesProto-Oncogene Proteins c-mycTENT5C protein, human

Identifiers

PMID30337605
PMCPMC6194131
OpenAlexW2897459847

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.