Evidence map›Paper›PMID 30337518›Full record

ArticleTranslational psychiatry2018

Global long non-coding RNA expression in the rostral anterior cingulate cortex of depressed suicides.

Yi Zhou, Pierre-Eric Lutz, Yu Chang Wang, Jiannis Ragoussis, Gustavo Turecki

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 4 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 4 syntheses or guidelines pooled it, 78 citations in OpenAlex.

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  4. Genetics and epigenetics of self-injurious thoughts and behaviors: Systematic review of the suicide literature and methodological considerations.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2022
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yi ZhouMcGill Group for Suicide Studies, McGill University, 6875 LaSalle Boulevard, Montreal, QC, H4H 1R3, Canada.ORCID http://orcid.org/0000-0003-1301-7015
Pierre-Eric LutzMcGill Group for Suicide Studies, McGill University, 6875 LaSalle Boulevard, Montreal, QC, H4H 1R3, Canada.ORCID http://orcid.org/0000-0003-3383-1604
Yu Chang WangMcGill University and Génome Québec Innovation Centre, 740 Dr. Penfield Avenue, Room 7104, Montréal, QC, H3A 0G1, Canada.
Jiannis RagoussisMcGill University and Génome Québec Innovation Centre, 740 Dr. Penfield Avenue, Room 7104, Montréal, QC, H3A 0G1, Canada.
Gustavo TureckiMcGill Group for Suicide Studies, McGill University, 6875 LaSalle Boulevard, Montreal, QC, H4H 1R3, Canada. gustavo.turecki@mcgill.ca.ORCID http://orcid.org/0000-0003-4075-2736
McGill University · CAMcGill University and Génome Québec Innovation Centre · CAInstitut des Neurosciences Cellulaires et Intégratives · FR

Funding

Epigenetic Marks of Cocaine AddictionR01DA033684 · NIDA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MASH, DEBORAH C., TURECKI, GUSTAVO · 2011 to 2015
$3.6M
NIDA NIH HHS R01 DA033684
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) are an emerging class of regulatory RNA that may be implicated in psychiatric disorders. Here we performed RNA-sequencing in the rostral anterior cingulate cortex of 26 depressed suicides and 24 matched controls. We first performed differential lncRNA expression analysis, and then conducted Weighted Gene Co-expression Network Analysis (WGCNA) to identify co-expression modules associating with depression and suicide. We identified 23 differentially expressed lncRNAs (FDR < 0.1) as well as their differentially expressed overlapping and antisense protein-coding genes. Several of these overlapping or antisense genes were associated with interferon signaling, which is a component of the innate immune response. Using WGCNA, we identified modules of highly co-expressed genes associated with depression and suicide and found protein-coding genes highly connected to differentially expressed lncRNAs within these modules. These protein-coding genes were located distal to their associated lncRNAs and were found to be part of several GO terms enriched in the significant modules, which include: cytoskeleton organization, plasma membrane, cell adhesion, nucleus, DNA-binding, and regulation of dendrite development and morphology. Altogether, we report that lncRNAs are differentially expressed in the brains of depressed individuals who died by suicide and may represent regulators of important molecular functions and biological processes.

Indexed as

SuicideFemaleGene Expression RegulationGyrus CinguliHumansMajor Depressive DisorderMaleRNA, Long NoncodingSequence Analysis, RNATranscriptomeRNA, Long Noncoding

Identifiers

PMID30337518
PMCPMC6193959
OpenAlexW2897445681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.