Evidence map›Paper›PMID 30337484›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

Wellington Muchero, Kelsey L Sondreli, Jin-Gui Chen, Breeanna R Urbanowicz, Jin Zhang, Vasanth Singan, Yongil Yang, Robert S Brueggeman, Juan Franco-Coronado, Nivi Abraham and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
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  4. Review
  5. Genomic prediction of resistance toEvolutionary applications · 2024
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  13. Cell wall response of field grownFrontiers in plant science · 2023
    Article
  14. Review
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  16. Article
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Wellington MucheroBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.
Kelsey L SondreliDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.
Jin-Gui ChenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.ORCID 0000-0002-1752-4201
Breeanna R UrbanowiczComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.
Jin ZhangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.ORCID 0000-0002-8397-5078
Vasanth SinganJoint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.
Yongil YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.
Robert S BrueggemanDepartment of Plant Pathology, North Dakota State University, Fargo, ND 58102.
Juan Franco-CoronadoDepartment of Plant Pathology, North Dakota State University, Fargo, ND 58102.
Nivi AbrahamDepartment of Plant Pathology, North Dakota State University, Fargo, ND 58102.
Jeong-Yeh YangComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.
Kelley W MoremenComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.ORCID 0000-0003-1768-582X
Alexandra J WeisbergDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.
Jeff H ChangDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.ORCID 0000-0002-1833-0695
Erika LindquistJoint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.
Kerrie BarryJoint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.
Priya RanjanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.
Sara JawdyBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.
Jeremy SchmutzJoint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.
Gerald A TuskanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.
Jared M LeBoldusDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; jared.leboldus@science.oregonstate.edu.ORCID 0000-0003-3303-4269
Oak Ridge National Laboratory · USJoint Genome Institute · USOregon State University · USNorth Dakota State University · USUniversity of Georgia · US

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Recombinant Production of Glycosylation Enzymes for Biochem/Structural StudiesP01GM107012 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY · 2013 to 2017
$7.5M
NIGMS NIH HHS P01 GM107012NIGMS NIH HHS P41 GM103390
6 · The paper itself

Abstract

Invasive microbes causing diseases such as sudden oak death negatively affect ecosystems and economies around the world. The deployment of resistant genotypes for combating introduced diseases typically relies on breeding programs that can take decades to complete. To demonstrate how this process can be accelerated, we employed a genome-wide association mapping of

Indexed as

Gene Expression Regulation, PlantTranscriptomeAllelesChromosome MappingChromosomes, PlantDisease ResistanceGene Expression ProfilingGenetic LociHost-Pathogen InteractionsMannose-Binding LectinPlant DiseasesPlant ImmunityPlant ProteinsPopulusProtein KinasesReceptors, Cell SurfaceMannose-Binding LectinPlant ProteinsProtein KinasesReceptors, Cell Surfaceassociation mappingdisease resistanceinvasive diseasePopulus trichocarpaseptoria canker

Identifiers

PMID30337484
PMCPMC6233113
OpenAlexW2897966195

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.