Evidence map›Paper›PMID 30337369›Full record

ArticleThe Journal of biological chemistry2018

The molecular basis of protein toxin HicA-dependent binding of the protein antitoxin HicB to DNA.

Ashley J Winter, Christopher Williams, Michail N Isupov, Hannah Crocker, Mariya Gromova, Philip Marsh, Oliver J Wilkinson, Mark S Dillingham, Nicholas J Harmer, Richard W Titball and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Hidden diversity inMicrobiology spectrum · 2025
    Article
  3. Article
  4. Type II Toxin-Antitoxin Systems inInfection and drug resistance · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Entropic pressure controls the oligomerization of the Vibrio cholerae ParD2 antitoxin.Acta crystallographica. Section D, Structural biology · 2021
    Article
  10. Prokaryote toxin-antitoxin modules: Complex regulation of an unclear function.Protein science : a publication of the Protein Society · 2021
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Ashley J WinterFrom the School of Chemistry, University of Bristol Cantock's Close, Bristol BS8 1TS, United Kingdom.
Christopher WilliamsFrom the School of Chemistry, University of Bristol Cantock's Close, Bristol BS8 1TS, United Kingdom.ORCID 0000-0001-5806-9842
Michail N IsupovBiosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, United Kingdom.
Hannah CrockerFrom the School of Chemistry, University of Bristol Cantock's Close, Bristol BS8 1TS, United Kingdom.
Mariya GromovaFrom the School of Chemistry, University of Bristol Cantock's Close, Bristol BS8 1TS, United Kingdom.
Philip MarshFrom the School of Chemistry, University of Bristol Cantock's Close, Bristol BS8 1TS, United Kingdom.
Oliver J Wilkinsonthe School of Biochemistry, University of Bristol, Biomedical Sciences Building, University Walk, Bristol BS8 1TD United Kingdom.
Mark S Dillinghamthe School of Biochemistry, University of Bristol, Biomedical Sciences Building, University Walk, Bristol BS8 1TD United Kingdom.
Nicholas J HarmerBiosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, United Kingdom.
Richard W TitballBiosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, United Kingdom, R.W.Titball@exeter.ac.uk.
Matthew P CrumpFrom the School of Chemistry, University of Bristol Cantock's Close, Bristol BS8 1TS, United Kingdom, Matt.crump@bristol.ac.uk.ORCID 0000-0002-7868-5818
University of Bristol · GBUniversity of Exeter · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J014400/1Biotechnology and Biological Sciences Research Council BB/L01386X/1
6 · The paper itself

Abstract

Toxin-antitoxin (TA) systems are present in many bacteria and play important roles in bacterial growth, physiology, and pathogenicity. Those that are best studied are the type II TA systems, in which both toxins and antitoxins are proteins. The HicAB system is one of the prototypic TA systems, found in many bacterial species. Complex interactions between the protein toxin (HicA), the protein antitoxin (HicB), and the DNA upstream of the encoding genes regulate the activity of this system, but few structural details are available about how HicA destabilizes the HicB-DNA complex. Here, we determined the X-ray structures of HicB and the HicAB complex to 1.8 and 2.5 Å resolution, respectively, and characterized their DNA interactions. This revealed that HicB forms a tetramer and HicA and HicB form a heterooctameric complex that involves structural reorganization of the C-terminal (DNA-binding) region of HicB. Our observations indicated that HicA has a profound impact on binding of HicB to DNA sequences upstream of

Indexed as

AntitoxinsBacterial ProteinsBurkholderia pseudomalleiDNAModels, MolecularOperonProtein BindingProtein ConformationToxins, BiologicalAntitoxinsBacterial ProteinsDNAToxins, Biologicalantibiotic resistancebacterial toxinconditional cooperativityDNA-binding proteinHicABpersistenceprotein-protein interactionstructural biologytoxin–antitoxin systemtype II TA systemX-ray crystallography

Identifiers

PMID30337369
PMCPMC6302177
OpenAlexW2896196549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.