Evidence map›Paper›PMID 30335145›Full record

ArticleGenome biology and evolution2018

Genome Sequence of the Wheat Stem Sawfly, Cephus cinctus, Representing an Early-Branching Lineage of the Hymenoptera, Illuminates Evolution of Hymenopteran Chemoreceptors.

Hugh M Robertson, Robert M Waterhouse, Kimberly K O Walden, Livio Ruzzante, Maarten J M F Reijnders, Brad S Coates, Fabrice Legeai, Joanna C Gress, Sezgi Biyiklioglu, David K Weaver and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

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  8. Tracking Adaptive Pathways of Invasive Insects: Novel Insight from Genomics.International journal of molecular sciences · 2023
    Review
  9. Article
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  11. Review
  12. Article
  13. Article
  14. Profiling of MicroRNAs in Midguts ofFrontiers in genetics · 2021
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Hugh M RobertsonDepartment of Entomology, University of Illinois at Urbana-Champaign.
Robert M WaterhouseDepartment of Ecology and Evolution, University of Lausanne, Switzerland.
Kimberly K O WaldenDepartment of Entomology, University of Illinois at Urbana-Champaign.
Livio RuzzanteDepartment of Ecology and Evolution, University of Lausanne, Switzerland.
Maarten J M F ReijndersDepartment of Ecology and Evolution, University of Lausanne, Switzerland.
Brad S CoatesUnited States Department of Agriculture, Agricultural Research Service (USDA ARS), Corn Insects & Crop Genetics Research Unit, Ames, Iowa.
Fabrice LegeaiEcology and Genetics of Insects, INRA, UMR IGEPP 1349, Rennes, France.
Joanna C GressDepartment of Science and Mathematics, Abraham Baldwin Agricultural College, Tifton, Georgia.
Sezgi BiyikliogluDepartment of Plant Sciences and Plant Pathology, Montana State University.
David K WeaverDepartment of Land Resources and Environmental Sciences, Montana State University.
Kevin W WannerDepartment of Plant Sciences and Plant Pathology, Montana State University.
Hikmet BudakDepartment of Plant Sciences and Plant Pathology, Montana State University.
Montana State University · USSIB Swiss Institute of Bioinformatics · CHUniversity of Illinois Urbana-Champaign · USAgricultural Research Service · USInstitut de Génétique, Environnement et Protection des Plantes · FRUniversity of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The wheat stem sawfly, Cephus cinctus, is a major pest of wheat and key ecological player in the grasslands of western North America. It also represents the distinctive Cephoidea superfamily of sawflies (Symphyta) that appeared early during the hymenopteran radiation, but after three early-branching eusymphytan superfamilies that form the base of the order Hymenoptera. We present a high-quality draft genome assembly of 162 Mb in 1,976 scaffolds with a scaffold N50 of 622 kb. Automated gene annotation identified 11,210 protein-coding gene models and 1,307 noncoding RNA models. Thirteen percent of the assembly consists of ∼58,000 transposable elements partitioned equally between Class-I and Class-II elements. Orthology analysis reveals that 86% of Cephus proteins have identifiable orthologs in other insects. Phylogenomic analysis of conserved subsets of these proteins supports the placement of the Cephoidea between the Eusymphyta and the parasitic woodwasp superfamily Orussoidea. Manual annotation and phylogenetic analysis of families of odorant, gustatory, and ionotropic receptors, plus odorant-binding proteins, shows that Cephus has representatives for most conserved and expanded gene lineages in the Apocrita (wasps, ants, and bees). Cephus has also maintained several insect gene lineages that have been lost from the Apocrita, most prominently the carbon dioxide receptor subfamily. Furthermore, Cephus encodes a few small lineage-specific chemoreceptor gene family expansions that might be involved in adaptations to new grasses including wheat. These comparative analyses identify gene family members likely to have been present in the hymenopteran ancestor and provide a new perspective on the evolution of the chemosensory gene repertoire.

Indexed as

Evolution, MolecularGenome, InsectAnimalsDNA Transposable ElementsFemaleHymenopteraInsect ProteinsMaleMicroRNAsPhylogenyReceptors, OdorantDNA Transposable ElementsInsect ProteinsMicroRNAsReceptors, Odorant

Identifiers

PMID30335145
PMCPMC6250288
OpenAlexW2896235562

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.