Evidence map›Paper›PMID 30335144›Full record

ArticleGenome biology and evolution2018

Moraxella catarrhalis Restriction-Modification Systems Are Associated with Phylogenetic Lineage and Disease.

Luke V Blakeway, Aimee Tan, Rachael Lappan, Amir Ariff, Janessa L Pickering, Christopher S Peacock, Christopher C Blyth, Charlene M Kahler, Barbara J Chang, Deborah Lehmann and 7 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Phylogenetic Lineages and Diseases Associated withInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Gene Expression Regulation in Airway Pathogens: Importance for Otitis Media.Frontiers in cellular and infection microbiology · 2022
    Review
  7. Article
  8. Article
  9. Panel 7 - Pathogenesis of otitis media - a review of the literature between 2015 and 2019.International journal of pediatric otorhinolaryngology · 2020
    Review
  10. The bacterial epigenome.Nature reviews. Microbiology · 2020
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Luke V BlakewayInstitute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Aimee TanInstitute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Rachael LappanThe Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, The University of Western Australia, Perth, Western Australia, Australia.
Amir AriffThe Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, The University of Western Australia, Perth, Western Australia, Australia.
Janessa L PickeringWesfarmers Centre of Vaccines and Infectious Diseases, Telethon Kids Institute, The University of Western Australia, Perth, Western Australia, Australia.
Christopher S PeacockThe Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, The University of Western Australia, Perth, Western Australia, Australia.
Christopher C BlythWesfarmers Centre of Vaccines and Infectious Diseases, Telethon Kids Institute, The University of Western Australia, Perth, Western Australia, Australia.
Charlene M KahlerThe Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, The University of Western Australia, Perth, Western Australia, Australia.
Barbara J ChangThe Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, The University of Western Australia, Perth, Western Australia, Australia.
Deborah LehmannWesfarmers Centre of Vaccines and Infectious Diseases, Telethon Kids Institute, The University of Western Australia, Perth, Western Australia, Australia.
Lea-Ann S KirkhamWesfarmers Centre of Vaccines and Infectious Diseases, Telethon Kids Institute, The University of Western Australia, Perth, Western Australia, Australia.
Timothy F MurphyClinical and Translational Research Center, University at Buffalo, the State University of New York, Buffalo, New York, USA.
Michael P JenningsInstitute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Lauren O BakaletzCenter for Microbial Pathogenesis, The Research Institute at Nationwide Children's Hospital, Columbus, Ohio, USA.
John M AtackInstitute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Ian R PeakInstitute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Kate L SeibInstitute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Griffith University · AUUniversity of Western Australia · AUThe Kids Research Institute Australia · AUThe Ohio State University · USUniversity at Buffalo, State University of New York · US

Funding

BACTERIAL RESPIRATORY PATHOGENS RESEARCH UNIT (BRPRU)N01AI30040 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2007 to 2009
$8.8M
Moraxella catarrhalis: virulence-based preventionR01DC012200 · NIDCD · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2012 to 2016
$1.8M
VIRAL RESPIRATORY PATHOGENS RESEARCH UNIT /VRPRU/-266030040-266030040N01AI030040 · NIAID · UNIVERSITY OF IOWA · PI APICELLA, MICHAEL A. · 2003 to 2006
–
NIAID NIH HHS N01 AI030040NIAID NIH HHS N01AI30040NIDCD NIH HHS R01 DC012200
6 · The paper itself

Abstract

Moraxella catarrhalis is a human-adapted pathogen, and a major cause of otitis media (OM) and exacerbations of chronic obstructive pulmonary disease. The species is comprised of two main phylogenetic lineages, RB1 and RB2/3. Restriction-modification (R-M) systems are among the few lineage-associated genes identified in other bacterial genera and have multiple functions including defense against foreign invading DNA, maintenance of speciation, and epigenetic regulation of gene expression. Here, we define the repertoire of R-M systems in 51 publicly available M. catarrhalis genomes and report their distribution among M. catarrhalis phylogenetic lineages. An association with phylogenetic lineage (RB1 or RB2/3) was observed for six R-M systems, which may contribute to the evolution of the lineages by restricting DNA transformation. In addition, we observed a relationship between a mutually exclusive Type I R-M system and a Type III R-M system at a single locus conserved throughout a geographically and clinically diverse set of M. catarrhalis isolates. The Type III R-M system at this locus contains the phase-variable Type III DNA methyltransferase, modM, which controls a phasevarion (phase-variable regulon). We observed an association between modM presence and OM-associated middle ear isolates, indicating a potential role for ModM-mediated epigenetic regulation in OM pathobiology.

Indexed as

DNA Restriction-Modification EnzymesGenome, BacterialMoraxella catarrhalisPhylogenyDNA Restriction-Modification Enzymes

Identifiers

PMID30335144
PMCPMC6241649
OpenAlexW2896088498

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.