Evidence map›Paper›PMID 30335141›Full record

ArticleHuman molecular genetics2019

A recurrent missense variant in SLC9A7 causes nonsyndromic X-linked intellectual disability with alteration of Golgi acidification and aberrant glycosylation.

Wujood Khayat, Anna Hackett, Marie Shaw, Alina Ilie, Tracy Dudding-Byth, Vera M Kalscheuer, Louise Christie, Mark A Corbett, Jane Juusola, Kathryn L Friend and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. HGG advances · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. The Golgi as a "Proton Sink" in Cancer.Frontiers in cell and developmental biology · 2021
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Golgi pH, Ion and Redox Homeostasis: How Much Do They Really Matter?Frontiers in cell and developmental biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 4 countries.

Wujood KhayatDepartment of Physiology, McGill University, Montreal, Quebec, Canada.
Anna HackettGenetics of Learning Disability Service, Hunter Genetics, Waratah, NSW, Australia.
Marie ShawAdelaide Medical School and Robinson Research Institute, The University of Adelaide, Adelaide, SA, Australia.
Alina IlieDepartment of Physiology, McGill University, Montreal, Quebec, Canada.
Tracy Dudding-BythGenetics of Learning Disability Service, Hunter Genetics, Waratah, NSW, Australia.
Vera M KalscheuerResearch Group Development and Disease, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Louise ChristieGenetics of Learning Disability Service, Hunter Genetics, Waratah, NSW, Australia.
Mark A CorbettAdelaide Medical School and Robinson Research Institute, The University of Adelaide, Adelaide, SA, Australia.
Jane JuusolaGeneDx, Gaithersburg, MD, USA.
Kathryn L FriendGenetics and Molecular Pathology, SA Pathology, Adelaide, SA, Australia.
Brian M KirmseDepartment of Pediatrics, Division of Medical Genetics, University of Mississippi Medical Center, Jackson, MS, USA.
Jozef GeczAdelaide Medical School and Robinson Research Institute, The University of Adelaide, Adelaide, SA, Australia.
Michael FieldGenetics of Learning Disability Service, Hunter Genetics, Waratah, NSW, Australia.
John OrlowskiDepartment of Physiology, McGill University, Montreal, Quebec, Canada.
Hunter Genetics · AUMcGill University · CAThe University of Adelaide · AUMax Planck Institute for Molecular Genetics · DESouth Australian Health and Medical Research Institute · AUSouth Australia Pathology · AUUniversity of Mississippi Medical Center · US

Funding

CIHR MOP-111191CIHR PJT-155976
6 · The paper itself

Abstract

We report two unrelated families with multigenerational nonsyndromic intellectual disability (ID) segregating with a recurrent de novo missense variant (c.1543C>T:p.Leu515Phe) in the alkali cation/proton exchanger gene SLC9A7 (also commonly referred to as NHE7). SLC9A7 is located on human X chromosome at Xp11.3 and has not yet been associated with a human phenotype. The gene is widely transcribed, but especially abundant in brain, skeletal muscle and various secretory tissues. Within cells, SLC9A7 resides in the Golgi apparatus, with prominent enrichment in the trans-Golgi network (TGN) and post-Golgi vesicles. In transfected Chinese hamster ovary AP-1 cells, the Leu515Phe mutant protein was correctly targeted to the TGN/post-Golgi vesicles, but its N-linked oligosaccharide maturation as well as that of a co-transfected secretory membrane glycoprotein, vesicular stomatitis virus G (VSVG) glycoprotein, was reduced compared to cells co-expressing SLC9A7 wild-type and VSVG. This correlated with alkalinization of the TGN/post-Golgi compartments, suggestive of a gain-of-function. Membrane trafficking of glycosylation-deficient Leu515Phe and co-transfected VSVG to the cell surface, however, was relatively unaffected. Mass spectrometry analysis of patient sera also revealed an abnormal N-glycosylation profile for transferrin, a clinical diagnostic marker for congenital disorders of glycosylation. These data implicate a crucial role for SLC9A7 in the regulation of TGN/post-Golgi pH homeostasis and glycosylation of exported cargo, which may underlie the cellular pathophysiology and neurodevelopmental deficits associated with this particular nonsyndromic form of X-linked ID.

Indexed as

AcidsAnimalsCell MembraneCHO CellsCricetinaeCricetulusGene Expression RegulationGenetic Diseases, X-LinkedGlycosylationGolgi ApparatusHumansIntellectual DisabilityMembrane GlycoproteinsMutation, MissenseProtein TransportSodium-Hydrogen ExchangersAcidsG protein, vesicular stomatitis virusMembrane GlycoproteinsSLC9A7 protein, humanSodium-Hydrogen ExchangersViral Envelope Proteins

Identifiers

PMID30335141
PMCPMC6360272
OpenAlexW2896008938

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.