Evidence map›Paper›PMID 30334565›Full record

ArticleGenetics and molecular biology

Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development.

Juliane Karine Ishida, Danielle G G Caldas, Lucas Roberto Oliveira, Gabriela Campos Frederici, Lucas Margato Pereira Leite, Tsai Siu Mui

Open access · goldAbstract read
In one paragraph

Article in Genetics and molecular biology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Systematic Analysis of NRAMP Family Genes inInternational journal of molecular sciences · 2023
    Article
  8. Biofortification of common bean (Food and energy security · 2023
    Review
  9. Genome-Wide Identification and Expression Analysis Reveals Roles of theInternational journal of molecular sciences · 2023
    Article
  10. Frontiers in plant science · 2023
    Article
  11. PcNRAMP1 Enhances Cadmium Uptake and Accumulation inInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
  14. Zinc Hyperaccumulation in Plants: A Review.Plants (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Juliane Karine IshidaCentro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA-USP), Piracicaba, SP, Brazil.ORCID 0000-0002-0956-7578
Danielle G G CaldasCentro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA-USP), Piracicaba, SP, Brazil.
Lucas Roberto OliveiraCentro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA-USP), Piracicaba, SP, Brazil.
Gabriela Campos FredericiCentro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA-USP), Piracicaba, SP, Brazil.
Lucas Margato Pereira LeiteCentro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA-USP), Piracicaba, SP, Brazil.
Tsai Siu MuiCentro de Energia Nuclear na Agricultura, Universidade de São Paulo (CENA-USP), Piracicaba, SP, Brazil.
Universidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transporter proteins play an essential role in the uptake, trafficking and storage of metals in plant tissues. The Natural Resistance-Associated Macrophage Protein (NRAMP) family plays an essential role in divalent metal transport. We conducted bioinformatics approaches to identify seven NRAMP genes in the Phaseolus vulgaris genome, investigated their phylogenetic relation, and performed transmembrane domain and gene/protein structure analyses. We found that the NRAMP gene family forms two distinct groups. One group included the PvNRAMP1, -6, and -7 genes that share a fragmented structure with a numerous exon/intron organization and encode proteins with mitochondrial or plastidial localization. The other group is characterized by few exons that encode cytoplasmic proteins. In addition, our data indicated that PvNRAMP6 and -7 may be involved in mineral uptake and mobilization in nodule tissues, while the genes PvNRAMP1, -2, -3, -4 and -5 are potentially recruited during plant development. This data provided a more comprehensive understanding of the role of NRAMP transporters in metal homeostasis in P. vulgaris.

Identifiers

PMID30334565
PMCPMC6415609
OpenAlexW2897989370

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.