Evidence map›Paper›PMID 30333612›Full record

ReviewNature immunology2018

The value of transcriptomics in advancing knowledge of the immune response and diagnosis in tuberculosis.

Akul Singhania, Robert J Wilkinson, Marc Rodrigue, Pranabashis Haldar, Anne O'Garra

Abstract readReview
In one paragraph

Review in Nature immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Trial
  2. Doxycycline host-directed therapy in human pulmonary tuberculosis.The Journal of clinical investigation · 2021
    Trial
  3. Trial
  4. Review
  5. Observational
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Construction and verification of early diagnosis model of tuberculous meningitis.Frontiers in cellular and infection microbiology · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Exposure to Urban Air Pollution Particulate Matter Modifies Th1/Th2American journal of respiratory cell and molecular biology · 2025
    Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Akul SinghaniaLaboratory of Immunoregulation and Infection, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0002-6941-3618
Robert J WilkinsonLaboratory of Tuberculosis, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0002-2753-1800
Marc RodrigueMedical Diagnostic Discovery Department, bioMerieux SA, Marcy l'Etoile, France.
Pranabashis HaldarRespiratory Biomedical Research Centre, Institute for Lung Health, Department of Infection Immunity and Inflammation, University of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0002-1572-5421
Anne O'GarraLaboratory of Immunoregulation and Infection, The Francis Crick Institute, London, UK. anne.ogarra@crick.ac.uk.ORCID http://orcid.org/0000-0001-9845-6134

Funding

Validation and Application of a Model for Human-like TB Latency in RabbitsU19AI111276 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI ALLAND, DAVID, ELLNER, JERROLD J. · 2014 to 2020
$23.3M
Inflammatory determinants of disease severity and treatment outcome in TB patientsU01AI115940 · NIAID · UNIVERSITY OF CAPE TOWN · PI SHER, ALAN, WILKINSON, ROBERT JOHN · 2015 to 2019
$1.1M
Medical Research Council MC_U117565642Medical Research Council MC_U117588499NIAID NIH HHS U01 AI115940NIAID NIH HHS U19 AI111276NIH HHS UO1AI115940Wellcome Trust 104803Wellcome Trust 203135Wellcome Trust FC001126Wellcome Trust FC001218
6 · The paper itself

Abstract

Blood transcriptomics analysis of tuberculosis has revealed an interferon-inducible gene signature that diminishes in expression after successful treatment; this promises improved diagnostics and treatment monitoring, which are essential for the eradication of tuberculosis. Sensitive radiography revealing lung abnormalities and blood transcriptomics have demonstrated heterogeneity in patients with active tuberculosis and exposed asymptomatic people with latent tuberculosis, suggestive of a continuum of infection and immune states. Here we describe the immune response to infection with Mycobacterium tuberculosis revealed through the use of transcriptomics, as well as differences among clinical phenotypes of infection that might provide information on temporal changes in host immunity associated with evolving infection. We also review the diverse blood transcriptional signatures, composed of small sets of genes, that have been proposed for the diagnosis of tuberculosis and the identification of at-risk asymptomatic people and suggest novel approaches for the development of such biomarkers for clinical use.

Indexed as

BiomarkersGene Expression ProfilingHumansTranscriptomeTuberculosisBiomarkers

Identifiers

PMID30333612
PMCPMC6554194

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.