Evidence map›Paper›PMID 30333512›Full record

ArticleScientific reports2018

Transposon mutagenesis screen in mice identifies TM9SF2 as a novel colorectal cancer oncogene.

Christopher R Clark, Makayla Maile, Patrick Blaney, Stefano R Hellweg, Anna Strauss, Wilaiwan Durose, Sambhawa Priya, Juri Habicht, Michael B Burns, Ran Blekhman and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 49 citations in OpenAlex.

  1. CRISPR-Cas9 screening revealsMolecular therapy. Advances · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Christopher R ClarkDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Makayla MaileDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Patrick BlaneyDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Stefano R HellwegDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Anna StraussDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Wilaiwan DuroseDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Sambhawa PriyaDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA.
Juri HabichtDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA.
Michael B BurnsDepartment of Biology, Loyola University, Chicago, IL, USA.
Ran BlekhmanDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA.
Juan E AbrahanteUniversity of Minnesota Informatics Institute, Minneapolis, MN, USA.
Timothy K StarrDepartment of Obstetrics, Gynecology and Women's Health, University of Minnesota, Minneapolis, MN, USA. Star0044@umn.edu.ORCID http://orcid.org/0000-0002-6308-3451
University of Minnesota · USLoyola University Chicago · US

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Douglas Yee · 1998 to 2026
$100.4M
University of Minnesota Clinical and Translational Science Institute (UMN CTSI)KL2TR000113 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R · 2012 to 2015
$5.4M
Cancer gene discovery using Sleeping Beauty transposon-mediated mutagenesisR00CA151672 · NCI · UNIVERSITY OF MINNESOTA · PI STARR, TIMOTHY KAEHLER · 2011 to 2013
$710k
NCATS NIH HHS KL2 TR000113NCI NIH HHS P30 CA077598NCI NIH HHS R00 CA151672U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 5R00CA1516723-03
6 · The paper itself

Abstract

New therapeutic targets for advanced colorectal cancer (CRC) are critically needed. Our laboratory recently performed an insertional mutagenesis screen in mice to identify novel CRC driver genes and, thus, potential drug targets. Here, we define Transmembrane 9 Superfamily 2 (TM9SF2) as a novel CRC oncogene. TM9SF2 is an understudied protein, belonging to a well conserved protein family characterized by their nine putative transmembrane domains. Based on our transposon screen we found that TM9SF2 is a candidate progression driver in digestive tract tumors. Analysis of The Cancer Genome Atlas (TCGA) data revealed that approximately 35% of CRC patients have elevated levels of TM9SF2 mRNA, data we validated using an independent set of CRC samples. RNAi silencing of TM9SF2 reduced CRC cell growth in an anchorage-independent manner, a hallmark of cancer. Furthermore, CRISPR/Cas9 knockout of TM9SF2 substantially diminished CRC tumor fitness in vitro and in vivo. Transcriptome analysis of TM9SF2 knockout cells revealed a potential role for TM9SF2 in cell cycle progression, oxidative phosphorylation, and ceramide signaling. Lastly, we report that increased TM9SF2 expression correlates with disease stage and low TM9SF2 expression correlate with a more favorable relapse-free survival. Taken together, this study provides evidence that TM9SF2 is a novel CRC oncogene.

Indexed as

Gene Expression Regulation, NeoplasticSignal TransductionAnimalsCell CycleCell Line, TumorCeramidesColorectal NeoplasmsHumansMembrane ProteinsMiceNuclear ProteinsOncogenesOxidative PhosphorylationTranscription FactorsXenograft Model Antitumor AssaysCeramidesELF1 protein, humanMembrane ProteinsNuclear ProteinsTM9SF2 protein, humanTranscription Factors

Identifiers

PMID30333512
PMCPMC6193042
OpenAlexW2897662670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.