Evidence map›Paper›PMID 30333383›Full record

ArticleMicrobes and environments2018

Compositional and Functional Shifts in the Epibiotic Bacterial Community of Shinkaia crosnieri Baba & Williams (a Squat Lobster from Hydrothermal Vents) during Methane-Fed Rearing.

Tomo-O Watsuji, Kaori Motoki, Emi Hada, Yukiko Nagai, Yoshihiro Takaki, Asami Yamamoto, Kenji Ueda, Takashi Toyofuku, Hiroyuki Yamamoto, Ken Takai

Abstract read
In one paragraph

Article in Microbes and environments, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
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  5. Metatranscriptomics bymSystems · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tomo-O WatsujiJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Kaori MotokiJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Emi HadaJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Yukiko NagaiJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Yoshihiro TakakiJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Asami YamamotoJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Kenji UedaLife Science Research Center, College of Bioresource Sciences, Nihon University.
Takashi ToyofukuJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Hiroyuki YamamotoJapan Agency for Marine-Earth Science and Technology (JAMSTEC).
Ken TakaiJapan Agency for Marine-Earth Science and Technology (JAMSTEC).

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hydrothermal vent squat lobster Shinkaia crosnieri Baba & Williams harbors an epibiotic bacterial community, which is numerically and functionally dominated by methanotrophs affiliated with Methylococcaceae and thioautotrophs affiliated with Sulfurovum and Thiotrichaceae. In the present study, shifts in the phylogenetic composition and metabolic function of the epibiont community were investigated using S. crosnieri individuals, which were reared for one year in a tank fed with methane as the energy and carbon source. The results obtained indicated that indigenous predominant thioautotrophic populations, such as Sulfurovum and Thiotrichaceae members, became absent, possibly due to the lack of an energy source, and epibiotic communities were dominated by indigenous Methylococcaceae and betaproteobacterial methylotrophic members that adapted to the conditions present during rearing for 12 months with a supply of methane. Furthermore, the overall phylogenetic composition of the epibiotic community markedly changed from a composition dominated by chemolithotrophs to one enriched with cross-feeding heterotrophs in addition to methanotrophs and methylotrophs. Thus, the composition and function of the S. crosnieri epibiotic bacterial community were strongly affected by the balance between the energy and carbon sources supplied for chemosynthetic production as well as that between the production and consumption of organic compounds.

Indexed as

Microbial ConsortiaAnimalsAnomuraBacteriaCarbonDNA, BacterialHydrothermal VentsMethanePhylogenyRNA, Ribosomal, 16SCarbonDNA, BacterialMethaneRNA, Ribosomal, 16Schemosynthetic ecosystemcross-feedingenergy and carbon sourcesepibiotic bacterial community

Identifiers

PMID30333383
PMCPMC6308002

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.