Evidence map›Paper›PMID 30333126›Full record

ArticleJournal of clinical microbiology2019

Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal

Marcus Nguyen, S Wesley Long, Patrick F McDermott, Randall J Olsen, Robert Olson, Rick L Stevens, Gregory H Tyson, Shaohua Zhao, James J Davis

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed, 3 pooled it
31.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 3 syntheses or guidelines pooled it, 278 citations in OpenAlex.

  1. Pooled it
  2. Systematic review of surveillance systems for AMR in Africa.The Journal of antimicrobial chemotherapy · 2022
    Pooled it
  3. Pooled it
  4. Review
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  12. mSphere · 2026
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88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Marcus NguyenUniversity of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
S Wesley LongCenter for Molecular and Translational Human Infectious Diseases Research, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, Texas, USA.ORCID 0000-0003-3043-5307
Patrick F McDermottU.S. Food and Drug Administration, Center for Veterinary Medicine, Office of Research, Laurel, Maryland, USA.
Randall J OlsenCenter for Molecular and Translational Human Infectious Diseases Research, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, Texas, USA.
Robert OlsonUniversity of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA.
Rick L StevensComputing, Environment and Life Sciences, Argonne National Laboratory, Argonne, Illinois, USA.
Gregory H TysonU.S. Food and Drug Administration, Center for Veterinary Medicine, Office of Research, Laurel, Maryland, USA.
Shaohua ZhaoU.S. Food and Drug Administration, Center for Veterinary Medicine, Office of Research, Laurel, Maryland, USA.
James J DavisUniversity of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, Illinois, USA jimdavis@uchicago.edu.
Argonne National Laboratory · USCenter for Veterinary Medicine · USHouston Methodist · US

Funding

NIAID NIH HHS HHSN272201400027C
6 · The paper itself

Abstract

Nontyphoidal

Indexed as

Drug Resistance, BacterialMachine LearningFoodborne DiseasesGenome, BacterialGenotyping TechniquesHumansMicrobial Sensitivity TestsSalmonellaSalmonella InfectionsUnited Statesantimicrobial susceptibility testingdeep learningdiagnosticsgenome sequencingmachine learning

Identifiers

PMID30333126
PMCPMC6355527
OpenAlexW2952668074

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.