Evidence map›Paper›PMID 30333051›Full record

ArticleMicrobiome2018

Daylight exposure modulates bacterial communities associated with household dust.

Ashkaan K Fahimipour, Erica M Hartmann, Andrew Siemens, Jeff Kline, David A Levin, Hannah Wilson, Clarisse M Betancourt-Román, G Z Brown, Mark Fretz, Dale Northcutt and 4 more

Abstract read
In one paragraph

Article in Microbiome, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Lighting in the Home and Health: A Systematic Review.International journal of environmental research and public health · 2021
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The indoors microbiome and human health.Nature reviews. Microbiology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ashkaan K FahimipourBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA. ashkaan.fahimipour@gmail.com.ORCID 0000-0001-9138-3593
Erica M HartmannBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Andrew SiemensBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Jeff KlineBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
David A LevinDepartment of Mathematics, University of Oregon, Eugene, OR, USA.
Hannah WilsonBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Clarisse M Betancourt-RománBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
G Z BrownBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Mark FretzBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Dale NorthcuttBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Kyla N SiemensBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Curtis HuttenhowerDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
Jessica L GreenBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.
Kevin Van Den WymelenbergBiology and the Built Environment Center, University of Oregon, 13th Ave, Eugene, OR, USA.

Funding

Research Area IIIP50GM098911 · NIGMS · UNIVERSITY OF OREGON · PI PARTHASARATHY, RAGHUVEER · 2012 to 2016
$9.8M
NIGMS NIH HHS P50 GM098911
6 · The paper itself

Abstract

backgroundMicrobial communities associated with indoor dust abound in the built environment. The transmission of sunlight through windows is a key building design consideration, but the effects of light exposure on dust communities remain unclear. We report results of an experiment and computational models designed to assess the effects of light exposure and wavelengths on the structure of the dust microbiome. Specifically, we placed household dust in replicate model "rooms" with windows that transmitted visible, ultraviolet, or no light and measured taxonomic compositions, absolute abundances, and viabilities of the resulting bacterial communities.

resultsLight exposure per se led to lower abundances of viable bacteria and communities that were compositionally distinct from dark rooms, suggesting preferential inactivation of some microbes over others under daylighting conditions. Differences between communities experiencing visible and ultraviolet light wavelengths were relatively minor, manifesting primarily in abundances of dead human-derived taxa. Daylighting was associated with the loss of a few numerically dominant groups of related microorganisms and apparent increases in the abundances of some rare groups, suggesting that a small number of microorganisms may have exhibited modest population growth under lighting conditions. Although biological processes like population growth on dust could have generated these patterns, we also present an alternate statistical explanation using sampling models from ecology; simulations indicate that artefactual, apparent increases in the abundances of very rare taxa may be a null expectation following the selective inactivation of dominant microorganisms in a community.

conclusionsOur experimental and simulation-based results indicate that dust contains living bacterial taxa that can be inactivated following changes in local abiotic conditions and suggest that the bactericidal potential of ordinary window-filtered sunlight may be similar to ultraviolet wavelengths across dosages that are relevant to real buildings.

Indexed as

SunlightUltraviolet RaysAir MicrobiologyAir Pollution, IndoorBacteriaDustEnvironmental MonitoringHumansMicrobiotaRNA, Ribosomal, 16SDustRNA, Ribosomal, 16SBuilt environmentDaylightDustMicrobiome

Identifiers

PMID30333051
PMCPMC6193304

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.