Evidence map›Paper›PMID 30332983›Full record

ArticleBMC genomics2018

Genome-wide identification and analysis of the COI gene family in wheat (Triticum aestivum L.).

Jian-Fang Bai, Yu-Kun Wang, Peng Wang, Shao-Hua Yuan, Jian-Gang Gao, Wen-Jing Duan, Na Wang, Feng-Ting Zhang, Wen-Jie Zhang, Meng-Ying Qin and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Genome Wide Identification and Characterization of WheatInternational journal of molecular sciences · 2022
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  12. Overexpression of ArabidopsisInternational journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Jian-Fang BaiBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.ORCID http://orcid.org/0000-0001-8384-7001
Yu-Kun WangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Peng WangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Shao-Hua YuanBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Jian-Gang GaoBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Wen-Jing DuanBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Na WangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Feng-Ting ZhangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Wen-Jie ZhangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Meng-Ying QinBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China.
Chang-Ping ZhaoBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China. cp_zhao@vip.sohu.com.
Li-Ping ZhangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry, Beijing, 100097, China. lpzhang8@126.com.
Beijing Academy of Agricultural and Forestry Sciences · CNBeijing Municipal Government · CN

Funding

International Cooperation Fund of Beijing Academy of Agricultural and Forestry Sciences GJHZ2018-1National Key Research Project 2016YFD0101601National Natural Science Foundation of China 31661143018National Natural Science Foundation of China 31872881National Science and Technology Support Plan 2014BAD01B09Natural Science Foundation of Beijing 6182014
6 · The paper itself

Abstract

backgroundCOI (CORONATINE INSENSITIVE), an F-box component of the Skp1-Cullin-F-box protein (SCF

resultsA total of 18 COI candidate sequences for 8 members of COI gene family were isolated in wheat (Triticum aestivum L.). Phylogenetic and structural analyses showed that these COI genes could be divided into seven distinct subfamilies. The COI genes showed high expression in stamens and glumes. The qRT-PCR results revealed that wheat COIs were involved in several abiotic stress responses and anther/glume dehiscence in the photoperiod-temperature sensitive genic male sterile (PTGMS) wheat line BS366.

conclusionsThe structural characteristics and expression patterns of the COI gene family in wheat as well as the stress-responsive and differential tissue-specific expression profiles of each TaCOI gene were examined in PTGMS wheat line BS366. In addition, we examined SA- and MeJA-induced gene expression in the wheat anther and glume to investigate the role of COI in the JA signaling pathway, involved in the regulation of abnormal anther dehiscence in the PTGMS wheat line. The results of this study contribute novel and detailed information about the TaCOI gene family in wheat and could be used as a benchmark for future studies of the molecular mechanisms of PTGMS in other crops.

Indexed as

GenomicsCyclopentanesGene Expression ProfilingGenome, PlantOrgan SpecificityOxylipinsPhylogenyPromoter Regions, GeneticSignal TransductionTriticumUbiquitin-Protein LigasesCyclopentanesjasmonic acidOxylipinsUbiquitin-Protein LigasesCOIGene familyJA signalingMale sterileQuantitative real-time PCRTriticum aestivum L.

Identifiers

PMID30332983
PMCPMC6192174
OpenAlexW2897495645

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.