Evidence map›Paper›PMID 30332657›Full record

ArticleCell reports2018

Genetic Architecture of Adaptive Immune System Identifies Key Immune Regulators.

Vasiliki Lagou, Josselyn E Garcia-Perez, Ide Smets, Lies Van Horebeek, Marijne Vandebergh, Liye Chen, Klara Mallants, Teresa Prezzemolo, Kelly Hilven, Stephanie Humblet-Baron and 8 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Vasiliki LagouKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; VIB Center for Brain & Disease Research, Laboratory for Translational Immunology, 3000 Leuven, Belgium; KU Leuven Department of Immunology and Microbiology, Laboratory for Translational Immunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Josselyn E Garcia-PerezVIB Center for Brain & Disease Research, Laboratory for Translational Immunology, 3000 Leuven, Belgium; KU Leuven Department of Immunology and Microbiology, Laboratory for Translational Immunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Ide SmetsKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium; Department of Neurology, University Hospitals Leuven, 3000 Leuven, Belgium.
Lies Van HorebeekKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Marijne VandeberghKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Liye ChenBotnar Research Centre, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford OX3 7LD, UK.
Klara MallantsKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Teresa PrezzemoloVIB Center for Brain & Disease Research, Laboratory for Translational Immunology, 3000 Leuven, Belgium; KU Leuven Department of Immunology and Microbiology, Laboratory for Translational Immunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Kelly HilvenKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Stephanie Humblet-BaronVIB Center for Brain & Disease Research, Laboratory for Translational Immunology, 3000 Leuven, Belgium; KU Leuven Department of Immunology and Microbiology, Laboratory for Translational Immunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Matthieu MoisseLeuven Brain Institute (LBI), Leuven, Belgium; VIB Center for Brain & Disease Research, Laboratory of Neurobiology, 3000 Leuven, Belgium; KU Leuven Department of Neurosciences, Experimental Neurology, 3000 Leuven, Belgium.
Philip Van DammeLeuven Brain Institute (LBI), Leuven, Belgium; Department of Neurology, University Hospitals Leuven, 3000 Leuven, Belgium; VIB Center for Brain & Disease Research, Laboratory of Neurobiology, 3000 Leuven, Belgium; KU Leuven Department of Neurosciences, Experimental Neurology, 3000 Leuven, Belgium.
Guy BoeckxstaensKU Leuven Department of Chronic Diseases, Metabolism and Ageing, Translational Research Center for GI Disorders (TARGID), 3000 Leuven, Belgium; Department of Gastroenterology, University Hospitals Leuven, 3000 Leuven, Belgium.
Paul BownessBotnar Research Centre, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford OX3 7LD, UK.
Bénédicte DuboisKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium; Department of Neurology, University Hospitals Leuven, 3000 Leuven, Belgium.
James DooleyVIB Center for Brain & Disease Research, Laboratory for Translational Immunology, 3000 Leuven, Belgium; KU Leuven Department of Immunology and Microbiology, Laboratory for Translational Immunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium.
Adrian ListonVIB Center for Brain & Disease Research, Laboratory for Translational Immunology, 3000 Leuven, Belgium; KU Leuven Department of Immunology and Microbiology, Laboratory for Translational Immunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium. Electronic address: adrian.liston@vib-kuleuven.be.
An GorisKU Leuven Department of Neurosciences, Laboratory for Neuroimmunology, 3000 Leuven, Belgium; Leuven Brain Institute (LBI), Leuven, Belgium. Electronic address: an.goris@kuleuven.be.
VIB-KU Leuven Center for Brain & Disease Research · BEAllen Institute for Brain Science · USNuffield Orthopaedic Centre · GBKU Leuven · BE

Funding

Wellcome Trust
6 · The paper itself

Abstract

The immune system is highly diverse, but characterization of its genetic architecture has lagged behind the vast progress made by genome-wide association studies (GWASs) of emergent diseases. Our GWAS for 54 functionally relevant phenotypes of the adaptive immune system in 489 healthy individuals identifies eight genome-wide significant associations explaining 6%-20% of variance. Coding and splicing variants in PTPRC and COMMD10 are involved in memory T cell differentiation. Genetic variation controlling disease-relevant T helper cell subsets includes RICTOR and STON2 associated with Th2 and Th17, respectively, and the interferon-lambda locus controlling regulatory T cell proliferation. Early and memory B cell differentiation stages are associated with variation in LARP1B and SP4. Finally, the latrophilin family member ADGRL2 correlates with baseline pro-inflammatory interleukin-6 levels. Suggestive associations reveal mechanisms of autoimmune disease associations, in particular related to pro-inflammatory cytokine production. Pinpointing these key human immune regulators offers attractive therapeutic perspectives.

Indexed as

Gene Expression RegulationGenetic Predisposition to DiseaseGenome-Wide Association StudyPolymorphism, Single NucleotideAdolescentAdultAgedAutoimmune DiseasesFemaleGene Expression ProfilingHealthy VolunteersHumansImmunologic FactorsMaleMiddle AgedTh17 CellsImmunologic Factorsadaptive immune systemassociationautoimmunitygeneticsgenome-wide associationimmune phenotypesusceptibility

Identifiers

PMID30332657
PMCPMC6205839
OpenAlexW2898023404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.