Evidence map›Paper›PMID 30327483›Full record

SynthesisNature communications2018

Phenome-wide association studies across large population cohorts support drug target validation.

Dorothée Diogo, Chao Tian, Christopher S Franklin, Mervi Alanne-Kinnunen, Michael March, Chris C A Spencer, Ciara Vangjeli, Michael E Weale, Hannele Mattsson, Elina Kilpeläinen and 24 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 4 pooled it
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 4 syntheses or guidelines pooled it, 192 citations in OpenAlex.

  1. Impact of PNPLA3 I148M on Drug-Induced Hepatocellular Liver Injury: A Systematic Review and Meta-Analysis.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Medea: An omics AI agent for therapeutic discovery.bioRxiv : the preprint server for biology · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Fifteen Years of PNPLA3: Transforming Hepatology Through Human Genetics.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Review
  20. Article

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 10 institutions in 4 countries.

Dorothée DiogoMerck Sharp & Dohme, Boston, MA, 02115, USA. dorothee.diogo@merck.com.
Chao Tian23andMe Inc, Mountain View, CA, 94041, USA.
Christopher S FranklinGenomics plc, Oxford, OX1 1JD, UK.
Mervi Alanne-KinnunenInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00014, Helsinki, Finland.
Michael MarchThe Children's Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA, 19104, USA.
Chris C A SpencerGenomics plc, Oxford, OX1 1JD, UK.
Ciara VangjeliGenomics plc, Oxford, OX1 1JD, UK.
Michael E WealeGenomics plc, Oxford, OX1 1JD, UK.
Hannele MattssonInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00014, Helsinki, Finland.
Elina KilpeläinenInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00014, Helsinki, Finland.
Patrick M A SleimanThe Children's Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA, 19104, USA.
Dermot F ReillyMerck Sharp & Dohme, Boston, MA, 02115, USA.
Joshua McElweeMerck Sharp & Dohme, Boston, MA, 02115, USA.
Joseph C MaranvilleMerck Sharp & Dohme, Boston, MA, 02115, USA.
Arnaub K ChatterjeeMerck Sharp & Dohme, Boston, MA, 02115, USA.
Aman BhandariMerck Sharp & Dohme, Boston, MA, 02115, USA.
Khanh-Dung H NguyenBiogen, Research and Early Development, Cambridge, MA, 02142, USA.
Karol EstradaBiogen, Research and Early Development, Cambridge, MA, 02142, USA.
Mary-Pat ReeveEisai, Andover, MA, 01810, USA.
Janna HutzEisai, Andover, MA, 01810, USA.
Nan BingPfizer, Cambridge, MA, 02139, USA.
Sally JohnBiogen, Research and Early Development, Cambridge, MA, 02142, USA.
Daniel G MacArthurBroad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Veikko SalomaaNational Institute for Health and Welfare, FI-00271, Helsinki, Finland.ORCID http://orcid.org/0000-0001-7563-5324
Samuli RipattiInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00014, Helsinki, Finland.
Hakon HakonarsonThe Children's Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA, 19104, USA.
Mark J DalyBroad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Aarno PalotieInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00014, Helsinki, Finland.
David A Hinds23andMe Inc, Mountain View, CA, 94041, USA.ORCID http://orcid.org/0000-0002-4911-803X
Peter DonnellyGenomics plc, Oxford, OX1 1JD, UK.ORCID http://orcid.org/0000-0001-9495-3408
Caroline S FoxMerck Sharp & Dohme, Boston, MA, 02115, USA.
Aaron G Day-WilliamsMerck Sharp & Dohme, Boston, MA, 02115, USA.
Robert M PlengeMerck Sharp & Dohme, Boston, MA, 02115, USA.
Heiko RunzMerck Sharp & Dohme, Boston, MA, 02115, USA. heiko.runz@gmail.com.
Merck & Co., Inc., Rahway, NJ, USA (United States) · USGenomics (United Kingdom) · GBBroad Institute · USBiogen (United States) · USChildren's Hospital of Philadelphia · USUniversity of Helsinki · FI23andMe (United States) · USEisai (United States) · USFinnish Institute for Health and Welfare · FIPfizer (United States) · US

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Integrative Analysis of a GWAS Repository with EMRs from over 40,000 ChildrenU01HG006830 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2012 to 2014
$3.7M
NHGRI NIH HHS U01 HG006830NIDDK NIH HHS P30 DK043351
6 · The paper itself

Abstract

Phenome-wide association studies (PheWAS) have been proposed as a possible aid in drug development through elucidating mechanisms of action, identifying alternative indications, or predicting adverse drug events (ADEs). Here, we select 25 single nucleotide polymorphisms (SNPs) linked through genome-wide association studies (GWAS) to 19 candidate drug targets for common disease indications. We interrogate these SNPs by PheWAS in four large cohorts with extensive health information (23andMe, UK Biobank, FINRISK, CHOP) for association with 1683 binary endpoints in up to 697,815 individuals and conduct meta-analyses for 145 mapped disease endpoints. Our analyses replicate 75% of known GWAS associations (P < 0.05) and identify nine study-wide significant novel associations (of 71 with FDR < 0.1). We describe associations that may predict ADEs, e.g., acne, high cholesterol, gout, and gallstones with rs738409 (p.I148M) in PNPLA3 and asthma with rs1990760 (p.T946A) in IFIH1. Our results demonstrate PheWAS as a powerful addition to the toolkit for drug discovery.

Indexed as

Polymorphism, Single NucleotideAcyltransferasesAsthmaCohort StudiesDatabases, FactualDrug DiscoveryGenetic Association StudiesGenetic PleiotropyGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansInterferon-Induced Helicase, IFIH1LipaseMembrane ProteinsMolecular Targeted TherapyPhenotypeAcyltransferasesIFIH1 protein, humanInterferon-Induced Helicase, IFIH1LipaseMembrane ProteinsPhospholipases A2, Calcium-IndependentPNPLA3 protein, human

Identifiers

PMID30327483
PMCPMC6191429
OpenAlexW2897181378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.