Evidence map›Paper›PMID 30327479›Full record

ArticleNature communications2018

Structural basis for arginine glycosylation of host substrates by bacterial effector proteins.

Jun Bae Park, Young Hun Kim, Youngki Yoo, Juyeon Kim, Sung-Hoon Jun, Jin Won Cho, Samir El Qaidi, Samuel Walpole, Serena Monaco, Ana A García-García and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Transition-state analysis of the arginine-specific human ADP-ribosyltransferase 1.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Mechanism of Bacterial ArginineACS catalysis · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Speaking the host language: howMicrobiology (Reading, England) · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Glycosylating Effectors ofBiomolecules · 2022
    Review
  20. Mechanism of RNA recognition by a Musashi RNA-binding protein.Current research in structural biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 4 countries.

Jun Bae ParkDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Young Hun KimDepartment of Microbiology, Yonsei University College of Medicine, 50-1 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Youngki YooDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Juyeon KimDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Sung-Hoon JunDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Jin Won ChoDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Samir El QaidiCollege of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
Samuel WalpoleSchool of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Serena MonacoSchool of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK.
Ana A García-GarcíaBIFI, University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+D, Zaragoza, 50018, Spain.
Miaomiao WuCollege of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
Michael P HaysCollege of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
Ramon Hurtado-GuerreroBIFI, University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Edificio I+D, Zaragoza, 50018, Spain. rhurtado@bifi.es.ORCID http://orcid.org/0000-0002-3122-9401
Jesus AnguloSchool of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ, UK. j.angulo@uea.ac.uk.ORCID http://orcid.org/0000-0001-7250-5639
Philip R HardwidgeCollege of Veterinary Medicine, Kansas State University, Manhattan, KS, 66506, USA.
Jeon-Soo ShinDepartment of Microbiology, Yonsei University College of Medicine, 50-1 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea. jsshin6203@yuhs.ac.
Hyun-Soo ChoDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea. hscho8@yonsei.ac.kr.
Yonsei University · KRKansas State University · USUniversity of East Anglia · GBUniversidad de Zaragoza · ES

Funding

Functions of Translocated Bacterial GlycosyltransferasesR21AI127973 · NIAID · KANSAS STATE UNIVERSITY · PI HARDWIDGE, PHILIP ROSS · 2017 to 2018
$413k
Bacterial effector inhibition of type I interferonR21AI093913 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI HARDWIDGE, PHILIP ROSS · 2011 to 2012
$375k
Biotechnology and Biological Sciences Research Council (BBSRC) BB/P010660/1Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) AI093913Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) AI127973National Research Foundation of Korea (NRF) 2014R1A4A1008625National Research Foundation of Korea (NRF) NRF- 2016R1A2B2013305NIAID NIH HHS R21 AI093913NIAID NIH HHS R21 AI127973
6 · The paper itself

Abstract

The bacterial effector proteins SseK and NleB glycosylate host proteins on arginine residues, leading to reduced NF-κB-dependent responses to infection. Salmonella SseK1 and SseK2 are E. coli NleB1 orthologs that behave as NleB1-like GTs, although they differ in protein substrate specificity. Here we report that these enzymes are retaining glycosyltransferases composed of a helix-loop-helix (HLH) domain, a lid domain, and a catalytic domain. A conserved HEN motif (His-Glu-Asn) in the active site is important for enzyme catalysis and bacterial virulence. We observe differences between SseK1 and SseK2 in interactions with substrates and identify substrate residues that are critical for enzyme recognition. Long Molecular Dynamics simulations suggest that the HLH domain determines substrate specificity and the lid-domain regulates the opening of the active site. Overall, our data suggest a front-face S

Indexed as

AcetylglucosamineAnimalsArginineBacterial ProteinsCatalytic DomainCrystallography, X-RayEscherichia coli ProteinsFemaleGlycosylationHEK293 CellsHost-Pathogen InteractionsHumansMice, Inbred BALB CMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularSalmonella typhimuriumAcetylglucosamineArginineBacterial ProteinsEscherichia coli ProteinsNleB protein, E coliSseK1 protein, Salmonella entericaSseK2 protein, Salmonella entericaVirulence Factors

Identifiers

PMID30327479
PMCPMC6191443
OpenAlexW2897597765

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.