Evidence map›Paper›PMID 30327475›Full record

ArticleNature communications2018

Tracing the transitions from pluripotency to germ cell fate with CRISPR screening.

Jamie A Hackett, Yun Huang, Ufuk Günesdogan, Kristjan A Gretarsson, Toshihiro Kobayashi, M Azim Surani

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 80 citations in OpenAlex.

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  15. The Novel Role ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 4 countries.

Jamie A HackettWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, UK. jamie.hackett@embl.it.ORCID http://orcid.org/0000-0002-6237-3684
Yun HuangWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, UK.ORCID http://orcid.org/0000-0001-7843-9126
Ufuk GünesdoganWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, UK.
Kristjan A GretarssonEpigenetics and Neurobiology Unit, European Molecular Biology Laboratory (EMBL), via Ramarini 32, 00015, Rome, Italy.
Toshihiro KobayashiWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, UK.
M Azim SuraniWellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, UK. a.surani@gurdon.cam.ac.uk.
University of Cambridge · GBEuropean Molecular Biology Laboratory · IT

Funding

Wellcome Trust
6 · The paper itself

Abstract

Early mammalian development entails transit through naive pluripotency towards post-implantation epiblast, which subsequently gives rise to primordial germ cells (PGC), the founding germline population. To investigate these cell fate transitions, we developed a compound-reporter to track cellular identity in a model of PGC specification (PGC-like cells; PGCLC), and coupled it with genome-wide CRISPR screening. We identify key genes both for exit from pluripotency and for acquisition of PGC fate, and characterise a central role for the transcription regulators Nr5a2 and Zfp296 in germline ontogeny. Abrogation of these genes results in widespread activation (Nr5a2

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsGene Expression Regulation, DevelopmentalAnimalsBasic Helix-Loop-Helix ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsEmbryonic DevelopmentGenes, ReporterGreen Fluorescent ProteinsMiceMice, TransgenicPluripotent Stem CellsPositive Regulatory Domain I-Binding Factor 1Receptors, Cytoplasmic and NuclearRepressor ProteinsWnt ProteinsBasic Helix-Loop-Helix ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDppa3 protein, mouseEnhancer of Split Groucho protein, mouseGreen Fluorescent ProteinsNr5a2 protein, mousePositive Regulatory Domain I-Binding Factor 1Prdm1 protein, mouseReceptors, Cytoplasmic and NuclearRepressor ProteinsWnt Proteinszinc finger protein 296, mouse

Identifiers

PMID30327475
PMCPMC6191455
OpenAlexW2795807776

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.