Evidence map›Paper›PMID 30326973›Full record

ArticleDiagnostic pathology2018

Microfluidics-based immunofluorescence for fast staining of ALK in lung adenocarcinoma.

Saška Brajkovic, Benjamin Pelz, Maria-Giuseppina Procopio, Anne-Laure Leblond, Grégoire Repond, Ariane Schaub-Clerigué, Diego G Dupouy, Alex Soltermann

Open access · goldAbstract read
In one paragraph

Article in Diagnostic pathology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Saška BrajkovicLunaphore Technologies SA, EPFL Innovation Park-Building A, CH-1015, Lausanne, Switzerland. saska.brajkovic@lunaphore.com.
Benjamin PelzMicrosystems Laboratory 2, Swiss Federal Institute of Technology, CH-1015, Lausanne, Switzerland.
Maria-Giuseppina ProcopioInstitute of Pathology and Molecular Pathology, University Hospital Zurich, CH-8091, Zurich, Switzerland.
Anne-Laure LeblondInstitute of Pathology and Molecular Pathology, University Hospital Zurich, CH-8091, Zurich, Switzerland.
Grégoire RepondLunaphore Technologies SA, EPFL Innovation Park-Building A, CH-1015, Lausanne, Switzerland.
Ariane Schaub-CleriguéLunaphore Technologies SA, EPFL Innovation Park-Building A, CH-1015, Lausanne, Switzerland.
Diego G DupouyLunaphore Technologies SA, EPFL Innovation Park-Building A, CH-1015, Lausanne, Switzerland.
Alex SoltermannInstitute of Pathology and Molecular Pathology, University Hospital Zurich, CH-8091, Zurich, Switzerland.
École Polytechnique Fédérale de Lausanne · CHUniversity Hospital of Zurich · CH

Funding

Swiss Commission of Technology and Innovation CTI 25736-1Swiss National Science Foundation SystemsX M-87704-01-02
6 · The paper itself

Abstract

backgroundAnaplastic lymphoma kinase (ALK) is a key oncogenic driver in lung adenocarcinoma patients and its fusion proteins are routinely assessed. The microfluidic tissue processor (MTP) device is based on a chip-confined low-volume technology allowing for rapid immunohistochemistry/immunofluorescence (IHC/IF) stainings of formalin-fixed paraffin-embedded (FFPE) or frozen tissue samples.

methodsA novel ALK IF protocol was developed for the MTP device using the primary mouse anti-human ALK antibody clone 5A4. FFPE tumor whole sections from 14 resected lung adenocarcinoma patients documented to be ALK positive (ALK+) by automated chromogenic IHC and/or FISH were used. MTP-derived IF immunoreactivity was measured by computerized analysis of digitalized images on individual frames of tumor epithelia and surrounding stroma, using an ImageJ plug-in.

resultsThe 5A4 antibody yielded saturated immunoreactivity at an incubation time of 4 min on a titration curve ranging from 2 to 32 min. Total staining time on the MTP device was 18 min including secondary IgG Alexa Fluor 647. MTP-based ALK IF confirmed all 12 cases; with epithelial signal above stromal staining based on computerized pixel-based measurement. MTP-IF (mean intensity levels 458 to 1301) and chromogenic IHC (H-score 120 to 300) showed an equal range of variation of 2.8 and 2.5 folds, respectively, and a trend for direct correlation (p-value 0.051).

conclusionThe newly developed protocol for immunofluorescent detection of ALK protein with the MTP device confirms chromogenic IHC results on FFPE lung adenocarcinoma specimens. MTP-based IF is fast and reliable. We foresee this study to be a first step opening the road for further realization of microfluidic-based assays for rapid simultaneous detection of targetable oncogenic and immune-system related markers in their topographical context to investigate tumour heterogeneity and micro-environmental interactions.

Indexed as

In Situ Hybridization, FluorescenceAdenocarcinoma of LungAnaplastic Lymphoma KinaseCarcinoma, Non-Small-Cell LungGene RearrangementHumansLung NeoplasmsReceptor Protein-Tyrosine KinasesSensitivity and SpecificityAnaplastic Lymphoma KinaseReceptor Protein-Tyrosine KinasesAnaplastic lymphoma kinaseImmunofluorescenceLung adenocarcinomaMicrofluidic tissue processor

Identifiers

PMID30326973
PMCPMC6192181
OpenAlexW2897689816

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.