Evidence map›Paper›PMID 30326636›Full record

ArticleGenes2018

An Analytic Approach Using Candidate Gene Selection and Logic Forest to Identify Gene by Environment Interactions (G × E) for Systemic Lupus Erythematosus in African Americans.

Bethany J Wolf, Paula S Ramos, J Madison Hyer, Viswanathan Ramakrishnan, Gary S Gilkeson, Gary Hardiman, Paul J Nietert, Diane L Kamen

Open access · goldAbstract read
In one paragraph

Article in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Mechanisms of Environment-Induced Autoimmunity.Annual review of pharmacology and toxicology · 2021
    Article
  3. Article
  4. Review
  5. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Bethany J WolfDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC 29425, USA. wolfb@musc.edu.
Paula S RamosDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC 29425, USA. ramosp@musc.edu.
J Madison HyerDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC 29425, USA. madison.hyer@osumc.edu.
Viswanathan RamakrishnanDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC 29425, USA. ramakris@musc.edu.
Gary S GilkesonDivision of Rheumatology and Immunology, Department of Medicine, Medical Univeristy of South Carolina, Charleston, SC 29425, USA. gilkeson@musc.edu.
Gary HardimanDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC 29425, USA. hardiman@musc.edu.ORCID 0000-0003-4558-0400
Paul J NietertDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC 29425, USA. nieterpj@musc.edu.ORCID 0000-0002-3933-4986
Diane L KamenDivision of Rheumatology and Immunology, Department of Medicine, Medical Univeristy of South Carolina, Charleston, SC 29425, USA. kamend@musc.edu.ORCID 0000-0002-7698-980X
Medical University of South Carolina · USQueen's University Belfast · GB

Funding

South Carolina Clinical & Translational Research Institute (SCTR)UL1TR001450 · NCATS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T., FLUME, PATRICK A · 2015 to 2024
$41.1M
Resource CoreP30AR072582 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI JAMES C OATES · 2017 to 2026
$8.5M
Patient Resource CoreP60AR062755 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI GILKESON, GARY S · 2012 to 2016
$5.8M
Statistical Models for Genetic Studies, Using Network and Integrative AnalysisR01GM122078 · NIGMS · OHIO STATE UNIVERSITY · PI CHUNG, DONGJUN · 2016 to 2020
$1.9M
Environmental Determinants of Lupus among African AmericansK24AR068406 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KAMEN, DIANE L · 2016 to 2020
$862k
The role of natural selection in SLE risk among African-AmericansK01AR067280 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI RAMOS, PAULA SOFIA · 2015 to 2018
$516k
Impact of Pathogenic and Protective Environmental Exposures on Autoimmune DiseaseR21AR067459 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KAMEN, DIANE L · 2015 to 2016
$362k
Algorithms for Literature-Guided Multi-Platform Identification of Cancer SubtypesR21CA209848 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI CHUNG, DONGJUN, KELEMEN, LINDA E · 2016 to 2017
$358k
NCATS NIH HHS UL1 TR001450NCATS NIH HHS UL1-TR001450NCI NIH HHS R21-CA209848NIAMS NIH HHS K01-AR067280NIAMS NIH HHS K24 AR068406NIAMS NIH HHS K24-AR068406NIAMS NIH HHS P30 AR072582NIAMS NIH HHS P30-AR072582NIAMS NIH HHS P60 AR062755NIAMS NIH HHS P60-AR062755NIAMS NIH HHS R21 AR067459NIAMS NIH HHS R21-AR067459NIGMS NIH HHS R01-GM122078
6 · The paper itself

Abstract

Development and progression of many human diseases, such as systemic lupus erythematosus (SLE), are hypothesized to result from interactions between genetic and environmental factors. Current approaches to identify and evaluate interactions are limited, most often focusing on main effects and two-way interactions. While higher order interactions associated with disease are documented, they are difficult to detect since expanding the search space to all possible interactions of

Indexed as

candidate genesgene–environment interactionslogic forestsystemic lupus erythematosus

Identifiers

PMID30326636
PMCPMC6211136
OpenAlexW2896538972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.