Evidence map›Paper›PMID 30325306›Full record

ArticleeLife2018

OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development.

Joel Hrit, Leeanne Goodrich, Cheng Li, Bang-An Wang, Ji Nie, Xiaolong Cui, Elizabeth Allene Martin, Eric Simental, Jenna Fernandez, Monica Yun Liu and 8 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Dissecting OGT's TPR domain to identify determinants of cellular function.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Review
  9. H3K4me3 remodeling induced acquired resistance through O-GlcNAc transferase.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2023
    Article
  10. Article
  11. Melatonin: A Potential Regulator of DNA Methylation.Antioxidants (Basel, Switzerland) · 2023
    Review
  12. Article
  13. The role of O-GlcNAcylation in development.Development (Cambridge, England) · 2023
    Article
  14. Review
  15. Review
  16. Article
  17. Mechanisms that regulate the activities of TET proteins.Cellular and molecular life sciences : CMLS · 2022
    Review
  18. New Insights into TETs in Psychiatric Disorders.International journal of molecular sciences · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 1 country.

Joel HritDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0002-4497-956X
Leeanne GoodrichDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0003-0603-4503
Cheng LiDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.
Bang-An WangGenomic Analysis Laboratory and Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, United States.ORCID http://orcid.org/0000-0003-4488-1738
Ji NieDepartment of Chemistry, Howard Hughes Medical Institute, University of Chicago, Chicago, United States.
Xiaolong CuiDepartment of Chemistry, Howard Hughes Medical Institute, University of Chicago, Chicago, United States.
Elizabeth Allene MartinDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, United States.
Eric SimentalDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, United States.ORCID http://orcid.org/0000-0002-8638-6578
Jenna FernandezDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, United States.
Monica Yun LiuDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States.ORCID https://orcid.org/0000-0003-3936-9377
Joseph R NeryGenomic Analysis Laboratory and Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, United States.
Rosa CastanonGenomic Analysis Laboratory and Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, United States.
Rahul M KohliDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States.
Natalia TretyakovaDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, United States.ORCID http://orcid.org/0000-0002-0621-6860
Chuan HeDepartment of Chemistry, Howard Hughes Medical Institute, University of Chicago, Chicago, United States.ORCID http://orcid.org/0000-0003-4319-7424
Joseph R EckerGenomic Analysis Laboratory and Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, United States.ORCID http://orcid.org/0000-0001-5799-5895
Mary GollDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.ORCID http://orcid.org/0000-0001-5003-6958
Barbara PanningDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0002-8301-1172
University of California, San Francisco · USSalk Institute for Biological Studies · USHoward Hughes Medical Institute · USMemorial Sloan Kettering Cancer Center · USUniversity of Minnesota · USUniversity of Pennsylvania · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
GENETICS OF EUCARYOTIC AND PROCARYOTIC ORGANISMST32GM007810 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHRAFI, KAVEH, NARLIKAR, GEETA J · 1985 to 2020
$15.1M
Training the Next Generation of Chemical BiologistsT32GM132029 · NIGMS · UNIVERSITY OF MINNESOTA · PI Erin Elizabeth Carlson, William Charles Krause Pomerantz · 2019 to 2026
$2.7M
Role of SOX2 O-GIcNAcylation in pluripotencyR01GM114871 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PANNING, BARBARA · 2016 to 2019
$1.3M
Regulation of Xist RNA processing in embryonic stem cellsR01GM088506 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PANNING, BARBARA · 2010 to 2013
$1.1M
California Institute for Regenerative Medicine TG2-01153NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM088506NIGMS NIH HHS R01 GM114871NIGMS NIH HHS T32 GM132029NIH HHS R01 GM088506
6 · The paper itself

Abstract

TET enzymes convert 5-methylcytosine to 5-hydroxymethylcytosine and higher oxidized derivatives. TETs stably associate with and are post-translationally modified by the nutrient-sensing enzyme OGT, suggesting a connection between metabolism and the epigenome. Here, we show for the first time that modification by OGT enhances TET1 activity in vitro. We identify a TET1 domain that is necessary and sufficient for binding to OGT and report a point mutation that disrupts the TET1-OGT interaction. We show that this interaction is necessary for TET1 to rescue hematopoetic stem cell production in tet mutant zebrafish embryos, suggesting that OGT promotes TET1's function during development. Finally, we show that disrupting the TET1-OGT interaction in mouse embryonic stem cells changes the abundance of TET2 and 5-methylcytosine, which is accompanied by alterations in gene expression. These results link metabolism and epigenetic control, which may be relevant to the developmental and disease processes regulated by these two enzymes.

Indexed as

5-MethylcytosineAnimalsDioxygenasesDNA-Binding ProteinsDNA MethylationEpigenomicsGene Expression Regulation, DevelopmentalHematopoiesisHumansMiceMouse Embryonic Stem CellsMutationN-AcetylglucosaminyltransferasesProtein BindingProtein DomainsProto-Oncogene Proteins5-hydroxymethylcytosine5-MethylcytosineDioxygenasesDNA-Binding ProteinsN-Acetylglucosaminyltransferasesogt.1 protein, zebrafishProto-Oncogene ProteinsTET1 protein, mouseTet1 protein, zebrafishZebrafish Proteinsbiochemistrycell biologychemical biologychromatindevelopmentepigeneticsmouseOGTstem cellsTET

Identifiers

PMID30325306
PMCPMC6214653
OpenAlexW2949504405

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.