Evidence map›Paper›PMID 30325204›Full record

ArticleFuture medicinal chemistry2018

A facile consensus ranking approach enhances virtual screening robustness and identifies a cell-active DYRK1α inhibitor.

Maria E Mavrogeni, Filippos Pronios, Danae Zareifi, Sofia Vasilakaki, Olivier Lozach, Leonidas Alexopoulos, Laurent Meijer, Vassilios Myrianthopoulos, Emmanuel Mikros

Abstract read
In one paragraph

Article in Future medicinal chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Key Topics in Molecular Docking for Drug Design.International journal of molecular sciences · 2019
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Maria E MavrogeniDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of Athens, Panepistimiopolis Zografou, 157 71 Athens, Greece.
Filippos ProniosDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of Athens, Panepistimiopolis Zografou, 157 71 Athens, Greece.
Danae ZareifiProtATonce Ltd, Dimokritos Science Park, Agia Paraskevi, 153 43 Athens, Greece.
Sofia VasilakakiDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of Athens, Panepistimiopolis Zografou, 157 71 Athens, Greece.
Olivier LozachLaboratoire Chimie Electrochimie Moléculaires et Chimie Analytique, University of Brest, 29238 Brest, France.
Leonidas AlexopoulosSchool of Mechanical Engineering, National Technical University of Athens, 157 80 Athens, Greece.
Laurent MeijerManRos Therapeutics, Perharidy Research Center, 29680 Roscoff, Bretagne, France.
Vassilios MyrianthopoulosDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of Athens, Panepistimiopolis Zografou, 157 71 Athens, Greece.
Emmanuel MikrosDepartment of Pharmaceutical Chemistry, School of Pharmacy, University of Athens, Panepistimiopolis Zografou, 157 71 Athens, Greece.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVirtual screening is vital for contemporary drug discovery but striking performance fluctuations are commonly encountered, thus hampering error-free use. Results and Methodology: A conceptual framework is suggested for combining screening algorithms characterized by orthogonality (docking-scoring calculations, 3D shape similarity, 2D fingerprint similarity) into a simple, efficient and expansible python-based consensus ranking scheme. An original experimental dataset is created for comparing individual screening methods versus the novel approach. Its utilization leads to identification and phosphoproteomic evaluation of a cell-active DYRK1α inhibitor.

conclusionConsensus ranking considerably stabilizes screening performance at reasonable computational cost, whereas individual screens are heavily dependent on calculation settings. Results indicate that the novel approach, currently available as a free online tool, is highly suitable for prospective screening by nonexperts.

Indexed as

AlgorithmsCell LineCell SurvivalConsensusDatabases, PharmaceuticalDrug DiscoveryDrug Evaluation, PreclinicalDyrk KinasesHumansMolecular Docking SimulationProspective StudiesProtein Kinase InhibitorsProtein Serine-Threonine KinasesProtein-Tyrosine KinasesDyrk KinasesProtein Kinase InhibitorsProtein Serine-Threonine KinasesProtein-Tyrosine Kinasesanalysis of residualsCREB1docking-scoring calculationsfingerprint similarityNCI diversity set-IINSC379099p53phosphoproteomicsscreening enrichmentshape-based similarity

Identifiers

PMID30325204
PMCPMC6479281

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.