Evidence map›Paper›PMID 30323833›Full record

ArticleFrontiers in genetics2018

Common and Rare Genetic Risk Factors Converge in Protein Interaction Networks Underlying Schizophrenia.

Xiao Chang, Leandro de Araujo Lima, Yichuan Liu, Jin Li, Qingqin Li, Patrick M A Sleiman, Hakon Hakonarson

Abstract read
In one paragraph

Article in Frontiers in genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiao ChangThe Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Leandro de Araujo LimaThe Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Yichuan LiuThe Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Jin LiThe Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Qingqin LiJanssen Research & Development, LLC, Titusville, NJ, United States.
Patrick M A SleimanThe Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, United States.
Hakon HakonarsonThe Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, United States.

Funding

2/2 Neurodevelopmental Genomics: Trajectories of Complex PhenotypesRC2MH089924 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2009 to 2011
$10.7M
NMDA Receptor Hypofunction in the Amygdala of Schizophrenia PatientsP50MH096891 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI BILKER, WARREN B. · 2012 to 2016
$10.6M
The Future of Genomics Medicine in Patient Care: Contributions from CHOPU01HG008684 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2015 to 2019
$5.0M
3/3-Networks from Multidimensional Data for Schizophrenia and Related DisordersR01MH097284 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2012 to 2014
$819k
NHGRI NIH HHS U01 HG008684NIMH NIH HHS P50 MH096891NIMH NIH HHS R01 MH097284NIMH NIH HHS RC2 MH089924
6 · The paper itself

Abstract

Hundreds of genomic loci have been identified with the recent advances of schizophrenia in genome-wide association studies (GWAS) and sequencing studies. However, the functional interactions among those genes remain largely unknown. We developed a network-based approach to integrate multiple genetic risk factors, which lead to the discovery of new susceptibility genes and causal sub-networks, or pathways in schizophrenia. We identified significantly and consistently over-represented pathways in the largest schizophrenia GWA studies, which are highly relevant to synaptic plasticity, neural development and signaling transduction, such as long-term potentiation, neurotrophin signaling pathway, and the ERBB signaling pathway. We also demonstrated that genes targeted by common SNPs are more likely to interact with genes harboring

Indexed as

copy number variation (CNV)gene modulesGWASPPI Networkschizophrenia

Identifiers

PMID30323833
PMCPMC6172705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.