Evidence map›Paper›PMID 30323302›Full record

ArticleScientific reports2018

NTnC-like genetically encoded calcium indicator with a positive and enhanced response and fast kinetics.

Natalia V Barykina, Danila A Doronin, Oksana M Subach, Vladimir P Sotskov, Viktor V Plusnin, Olga A Ivleva, Anna M Gruzdeva, Tatiana A Kunitsyna, Olga I Ivashkina, Alexander A Lazutkin and 8 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. CaCommunications biology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Design of Calcium-Binding Proteins to Sense Calcium.Molecules (Basel, Switzerland) · 2020
    Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Natalia V BarykinaMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.
Danila A DoroninMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.
Oksana M SubachMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.
Vladimir P SotskovMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.
Viktor V PlusninMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.
Olga A IvlevaMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.
Anna M GruzdevaP.K. Anokhin Institute of Normal Physiology, Moscow, 125315, Russia.
Tatiana A KunitsynaNational Research Center "Kurchatov Institute", Moscow, 123182, Russia.
Olga I IvashkinaP.K. Anokhin Institute of Normal Physiology, Moscow, 125315, Russia.
Alexander A LazutkinMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia.ORCID http://orcid.org/0000-0001-7598-4399
Aleksey Y MalyshevInstitute of Higher Nervous Activity and Neurophysiology of RAS, Moscow, 117485, Russia.
Ivan V SmirnovInstitute of Higher Nervous Activity and Neurophysiology of RAS, Moscow, 117485, Russia.
Anna M VarizhukFederal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, 119435, Russia.
Galina E PozmogovaFederal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, 119435, Russia.
Kiryl D PiatkevichMIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA, USA.
Konstantin V AnokhinP.K. Anokhin Institute of Normal Physiology, Moscow, 125315, Russia.
Grigori EnikolopovMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia. Grigori.Enikolopov@stonybrookmedicine.edu.
Fedor V SubachMoscow Institute of Physics and Technology, Dolgoprudny, 141701, Russia. subach.fv@mipt.ru.

Funding

Research Supplement for Kennelia MellansonRF1AG057705 · NIA · STATE UNIVERSITY NEW YORK STONY BROOK · PI BENVENISTE, HELENE D, ENIKOLOPOV, GRIGORI N · 2017 to 2021
$3.7M
Neural stem cells in the aging brainR01AG040209 · NIA · STATE UNIVERSITY NEW YORK STONY BROOK · PI ENIKOLOPOV, GRIGORI N · 2011 to 2015
$2.1M
NIA NIH HHS R01 AG040209NIA NIH HHS RF1 AG057705
6 · The paper itself

Abstract

The NTnC genetically encoded calcium indicator has an advantageous design because of its smaller size, GFP-like N- and C-terminal ends and two-fold reduced number of calcium binding sites compared with widely used indicators from the GCaMP family. However, NTnC has an inverted and modest calcium response and a low temporal resolution. By replacing the mNeonGreen fluorescent part in NTnC with EYFP, we engineered an NTnC-like indicator, referred to as YTnC, that had a positive and substantially improved calcium response and faster kinetics. YTnC had a 3-fold higher calcium response and 13.6-fold lower brightness than NTnC in vitro. According to stopped-flow experiments performed in vitro, YTnC had 4-fold faster calcium-dissociation kinetics than NTnC. In HeLa cells, YTnC exhibited a 3.3-fold lower brightness and 4.9-fold increased response to calcium transients than NTnC. The spontaneous activity of neuronal cultures induced a 3.6-fold larger ΔF/F response of YTnC than previously shown for NTnC. On patched neurons, YTnC had a 2.6-fold lower ΔF/F than GCaMP6s. YTnC successfully visualized calcium transients in neurons in the cortex of anesthetized mice and the hippocampus of awake mice using single- and two-photon microscopy. Moreover, YTnC outperformed GCaMP6s in the mitochondria and endoplasmic reticulum of cultured HeLa and neuronal cells.

Indexed as

Protein EngineeringAnimalsBinding SitesCalciumCalcium SignalingEndoplasmic ReticulumGreen Fluorescent ProteinsHeLa CellsHippocampusHumansKineticsMiceNeuronsProtein DomainsTroponin CCalciumGreen Fluorescent ProteinsTroponin C

Identifiers

PMID30323302
PMCPMC6189086

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.