Evidence map›Paper›PMID 30323281›Full record

ArticleNature communications2018

Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria.

Oriana S Fisher, Grace E Kenney, Matthew O Ross, Soo Y Ro, Betelehem E Lemma, Sharon Batelu, Paul M Thomas, Victoria C Sosnowski, Caroline J DeHart, Neil L Kelleher and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 65 citations in OpenAlex.

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  14. Direct Activation of the C(spJournal of the American Chemical Society · 2023
    Article
  15. Orchestrating copper binding: structure and variations on the cupredoxin fold.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Review
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Oriana S FisherDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Grace E KenneyDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.ORCID http://orcid.org/0000-0002-9579-3351
Matthew O RossDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Soo Y RoDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Betelehem E LemmaDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Sharon BateluDepartment of Pharmaceutical Sciences, Wayne State University, Detroit, 48201, MI, USA.
Paul M ThomasDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.ORCID http://orcid.org/0000-0003-2887-4765
Victoria C SosnowskiDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Caroline J DeHartDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Neil L KelleherDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.ORCID http://orcid.org/0000-0002-8815-3372
Timothy L StemmlerDepartment of Pharmaceutical Sciences, Wayne State University, Detroit, 48201, MI, USA.
Brian M HoffmanDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA.
Amy C RosenzweigDepartments of Molecular Biosciences and Chemistry, Northwestern University, Evanston, 60208, IL, USA. amyr@northwestern.edu.ORCID http://orcid.org/0000-0001-8472-4134
Northwestern University · USWayne State University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Metalloenzymes and metal homeostasisR35GM118035 · NIGMS · NORTHWESTERN UNIVERSITY · PI AMY C. ROSENZWEIG · 2016 to 2026
$7.1M
Coboglobins-Cobalt-Substituted Hemoglobins and MyoglobinR01GM111097 · NIGMS · NORTHWESTERN UNIVERSITY · PI HOFFMAN, BRIAN M · 2014 to 2025
$6.7M
Molecular Biophysics Training Program at Northwestern UniversityT32GM008382 · NIGMS · NORTHWESTERN UNIVERSITY · PI RADHAKRISHNAN, ISHWAR · 1990 to 2020
$4.3M
Mass Spectrometric Studies of Thiotemplate BiosynthesisR01AT009143 · NCCIH · NORTHWESTERN UNIVERSITY · PI NEIL L KELLEHER, NANCY P KELLER · 2016 to 2026
$4.2M
Structural Insights into the Function of FrataxinR01DK068139 · NIDDK · WAYNE STATE UNIVERSITY · PI STEMMLER, TIMOTHY LOUIS · 2005 to 2015
$3.5M
Characterization of pmoDF32GM119191 · NIGMS · NORTHWESTERN UNIVERSITY · PI FISHER, ORIANA S · 2016 to 2018
$174k
American Heart Association (American Heart Association, Inc.) 14PRE20460104NCCIH NIH HHS R01 AT009143NCI NIH HHS P30 CA060553NIDDK NIH HHS R01 DK068139NIGMS NIH HHS F32 GM119191NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R01 GM111097NIGMS NIH HHS R35 GM118035NIGMS NIH HHS T32 GM008061NIGMS NIH HHS T32 GM008382Office of Extramural Research, National Institutes of Health (OER) DK068139Office of Extramural Research, National Institutes of Health (OER) F32GM119191Office of Extramural Research, National Institutes of Health (OER) GM111097Office of Extramural Research, National Institutes of Health (OER) R01AT009143U.S. Department of Energy (DOE) DE-SC0016284
6 · The paper itself

Abstract

Methane-oxidizing microbes catalyze the oxidation of the greenhouse gas methane using the copper-dependent enzyme particulate methane monooxygenase (pMMO). Isolated pMMO exhibits lower activity than whole cells, however, suggesting that additional components may be required. A pMMO homolog, ammonia monooxygenase (AMO), converts ammonia to hydroxylamine in ammonia-oxidizing bacteria (AOB) which produce another potent greenhouse gas, nitrous oxide. Here we show that PmoD, a protein encoded within many pmo operons that is homologous to the AmoD proteins encoded within AOB amo operons, forms a copper center that exhibits the features of a well-defined Cu

Indexed as

Amino Acid MotifsAmmoniaBacterial ProteinsBetaproteobacteriaCopperHomeostasisLigandsMethaneOxidation-ReductionProtein DomainsProtein MultimerizationAmmoniaBacterial ProteinsCopperLigandsMethane

Identifiers

PMID30323281
PMCPMC6189053
OpenAlexW2897954952

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.