Evidence map›Paper›PMID 30323260›Full record

ArticleNature communications2018

Automated quantification of bioluminescence images.

Alexander D Klose, Neal Paragas

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Tracking of Urine-Derived Stem Cells in Mice.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Biomedical optics express · 2024
    Article
  7. Review
  8. In vivo three-dimensional brain imaging with chemiluminescence probes in Alzheimer's disease models.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Development of Fluorescent Bacteria withInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Alexander D KloseInVivo Analytics, New York, NY, USA. klose@invivoax.com.ORCID http://orcid.org/0000-0003-3534-9707
Neal ParagasInVivo Analytics, New York, NY, USA. paragas@uw.edu.ORCID http://orcid.org/0000-0001-6084-8220

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Christopher Hooper Goss, Lucas R Hoffman · 2010 to 2026
$21.4M
Optical small animal imaging unit for quantification of bacterial infectionsR44EB018644 · NIBIB · IN VIVO ANALYTICS, INC. · PI KLOSE, ALEXANDER D. · 2015 to 2016
$1.5M
INTERCALATED CELLS OF THE DISTAL NEPHRON DEFEND THE URINARY SYSTEMR00DK094873 · NIDDK · UNIVERSITY OF WASHINGTON · PI PARAGAS, NEAL · 2015 to 2017
$732k
Optical small animal imaging unit for quantification of bacterial infectionsR43EB018644 · NIBIB · IN VIVO ANALYTICS, INC. · PI KLOSE, ALEXANDER D. · 2014 to 2014
$215k
NIBIB NIH HHS R43 EB018644NIBIB NIH HHS R44 EB018644NIDDK NIH HHS P30 DK017047NIDDK NIH HHS P30 DK089507NIDDK NIH HHS R00 DK094873U.S. Department of Health & Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering (NIBIB) R43/44 EB018644U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) P30 DK017047U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) P30 DK089507U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R00 DK094873
6 · The paper itself

Abstract

We developed a computer-aided analysis tool for quantitatively determining bioluminescent reporter distributions inside small animals. The core innovations are a body-fitting animal shuttle and a statistical mouse atlas, both of which are spatially aligned and scaled according to the animal's weight, and hence provide data congruency across animals of varying size and pose. In conjunction with a multispectral bioluminescence tomography technique capitalizing on the spatial framework of the shuttle, the in vivo biodistribution of luminescent reporters can rapidly be calculated and, thus, enables operator-independent and computer-driven data analysis. We demonstrate its functionality by quantitatively monitoring a bacterial infection, where the bacterial organ burden was determined and validated with the established serial-plating method. In addition, the statistical mouse atlas was validated and compared to existing techniques providing an anatomical reference. The proposed data analysis tool promises to increase data throughput and data reproducibility and accelerate human disease modeling in mice.

Indexed as

Imaging, Three-DimensionalLuminescent MeasurementsAnimalsAutomationFemaleGenes, ReporterKidneyLuciferasesMice, Inbred C57BLModels, BiologicalOrgan SpecificityReproducibility of ResultsTomographyLuciferases

Identifiers

PMID30323260
PMCPMC6189049

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.