Evidence map›Paper›PMID 30323222›Full record

ArticleNature communications2018

CRISPR knockout screening identifies combinatorial drug targets in pancreatic cancer and models cellular drug response.

Karol Szlachta, Cem Kuscu, Turan Tufan, Sara J Adair, Stephen Shang, Alex D Michaels, Matthew G Mullen, Natasha Lopes Fischer, Jiekun Yang, Limin Liu and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. ETS‑1/ETS‑2 transcription factors in CVD (Review).International journal of molecular medicine · 2026
    Review
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  18. Article
  19. CRISPRingCancers · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Karol Szlachta *Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
Cem Kuscu *Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.ORCID http://orcid.org/0000-0001-7154-6762
Turan Tufan *Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
Sara J AdairDepartment of Surgery, University of Virginia School of Medicine, 1215 Lee St, Charlottesville, VA, 22908, USA.
Stephen ShangDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
Alex D MichaelsDepartment of Surgery, University of Virginia School of Medicine, 1215 Lee St, Charlottesville, VA, 22908, USA.
Matthew G MullenDepartment of Surgery, University of Virginia School of Medicine, 1215 Lee St, Charlottesville, VA, 22908, USA.
Natasha Lopes FischerDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.ORCID http://orcid.org/0000-0002-8836-8365
Jiekun YangDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.ORCID http://orcid.org/0000-0003-0920-052X
Limin LiuDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
Prasad TrivediDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
Edward B StelowDepartment of Pathology, University of Virginia School of Medicine, Charlottesville, 1215 Lee St, Charlottesville, VA, 22908, USA.
P Todd StukenbergDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
J Thomas ParsonsDepartment of Microbiology, Immunology, and Cancer Biology, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA.
Todd W BauerDepartment of Surgery, University of Virginia School of Medicine, 1215 Lee St, Charlottesville, VA, 22908, USA.
Mazhar AdliDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, 1340 JPA, Pinn Hall, Charlottesville, VA, 22908, USA. adli@virginia.edu.
University of Virginia · US

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Thomas P. Loughran · 1987 to 2026
$72.1M
Cancer Research Training Program: From Molecular Mechanisms to Therapeutic StrategiesT32CA009109 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Andrew Carl Dudley, Melanie R Rutkowski · 1985 to 2026
$13.9M
Single-Cell Epigenomics, Transcriptomics, and Bioinformatics CoreP50DK096373 · NIDDK · UNIVERSITY OF VIRGINIA · PI PATRICIO E. RAY · 2012 to 2026
$13.8M
Identifying the Drivers and Targeting Chemo Resistance in Ovarian CancerR01CA211648 · NCI · UNIVERSITY OF VIRGINIA · PI ADLI, MAZHAR · 2017 to 2021
$2.1M
Molecular Mechanisms of Mitotic RegulationR01GM118798 · NIGMS · UNIVERSITY OF VIRGINIA · PI STUKENBERG, P. TODD · 2017 to 2020
$1.8M
NCI NIH HHS L30 CA124093NCI NIH HHS P30 CA044579NCI NIH HHS R01 CA211648NCI NIH HHS T32 CA009109NIDDK NIH HHS P50 DK096373NIGMS NIH HHS R01 GM118798U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) NIH/NCI 1R01 CA211648-01
6 · The paper itself

Abstract

Predicting the response and identifying additional targets that will improve the efficacy of chemotherapy is a major goal in cancer research. Through large-scale in vivo and in vitro CRISPR knockout screens in pancreatic ductal adenocarcinoma cells, we identified genes whose genetic deletion or pharmacologic inhibition synergistically increase the cytotoxicity of MEK signaling inhibitors. Furthermore, we show that CRISPR viability scores combined with basal gene expression levels could model global cellular responses to the drug treatment. We develop drug response evaluation by in vivo CRISPR screening (DREBIC) method and validated its efficacy using large-scale experimental data from independent experiments. Comparative analyses demonstrate that DREBIC predicts drug response in cancer cells from a wide range of tissues with high accuracy and identifies therapeutic vulnerabilities of cancer-causing mutations to MEK inhibitors in various cancer types.

Indexed as

Combinatorial Chemistry TechniquesDrug Delivery SystemsGene Knockout TechniquesGenetic TestingModels, BiologicalAnimalsAntineoplastic AgentsCell Cycle CheckpointsCell DeathCell Line, TumorClustered Regularly Interspaced Short Palindromic RepeatsDrug SynergismHumansMice, NudeMitogen-Activated Protein Kinase KinasesPancreatic NeoplasmsAntineoplastic AgentsMitogen-Activated Protein Kinase Kinases

Identifiers

PMID30323222
PMCPMC6189038
OpenAlexW2896706128

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.