Evidence map›Paper›PMID 30323210›Full record

ArticleNature communications2018

Complex virome in feces from Amerindian children in isolated Amazonian villages.

Juliana D Siqueira, Maria Gloria Dominguez-Bello, Monica Contreras, Orlana Lander, Hortensia Caballero-Arias, Deng Xutao, Oscar Noya-Alarcon, Eric Delwart

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  11. Article
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  15. Article
  16. Viruses associated with ill health in wild chimpanzees.American journal of primatology · 2022
    Article
  17. Gut Virome: Role and Distribution in Health and Gastrointestinal Diseases.Frontiers in cellular and infection microbiology · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Juliana D SiqueiraBlood Systems Research Institute, San Francisco, CA, 94118, USA.ORCID http://orcid.org/0000-0002-4266-9795
Maria Gloria Dominguez-BelloDepartment of Biochemistry and Microbiology and of Anthropology, Rutgers University, New Brunswick, NJ, 08901-8554, USA.
Monica ContrerasCenter for Biophysics and Biochemistry, Venezuelan Institute of Scientific Research (IVIC), Caracas, 01204, Venezuela.
Orlana LanderInstituto de Medicina Tropical, Universidad Central de Venezuela, Caracas, 1051, Venezuela.
Hortensia Caballero-AriasDepartment of Anthropology, Venezuelan Institute of Scientific Research (IVIC), Caracas, 01204, Venezuela.
Deng XutaoBlood Systems Research Institute, San Francisco, CA, 94118, USA.
Oscar Noya-AlarconInstituto de Medicina Tropical, Universidad Central de Venezuela, Caracas, 1051, Venezuela.
Eric DelwartBlood Systems Research Institute, San Francisco, CA, 94118, USA. delwarte@medicine.ucsf.edu.

Funding

IRS1 and 2 Signaling in Mammary Development and CancerR01CA094118 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2002 to 2015
$3.0M
Metagenomic detection of emerging viruses in the blood supplyR01HL105770 · NHLBI · VITALANT · PI DELWART, ERIC L · 2011 to 2015
$2.4M
NCI NIH HHS R01 CA094118NHLBI NIH HHS R01 HL105770
6 · The paper itself

Abstract

The number of viruses circulating in small isolated human populations may be reduced by viral extinctions and rare introductions. Here we used viral metagenomics to characterize the eukaryotic virome in feces from healthy children from a large urban center and from three Amerindian villages with minimal outside contact. Numerous human enteric viruses, mainly from the Picornaviridae and Caliciviridae families, were sequenced from each of the sites. Multiple children from the same villages shed closely related viruses reflecting frequent transmission clusters. Feces of isolated villagers also contained multiple viral genomes of unknown cellular origin from the Picornavirales order and CRESS-DNA group and higher levels of nematode and protozoan DNA. Despite cultural and geographic isolation, the diversity of enteric human viruses was therefore not reduced in these Amazonian villages. Frequent viral introductions and/or increased susceptibility to enteric infections may account for the complex fecal virome of Amerindian children in isolated villages.

Indexed as

American Indian or Alaska NativeAnimalsBase SequenceChildChild, PreschoolDNA, ViralFecesHumansPhylogenySequence Analysis, DNAVenezuelaVirusesDNA, Viral

Identifiers

PMID30323210
PMCPMC6189175

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.