Evidence map›Paper›PMID 30323066›Full record

ArticleThe Journal of biological chemistry2018

A multipronged approach unravels unprecedented protein-protein interactions in the human 2-oxoglutarate dehydrogenase multienzyme complex.

Jieyu Zhou, Luying Yang, Oliver Ozohanics, Xu Zhang, Junjie Wang, Attila Ambrus, Palaniappa Arjunan, Roman Brukh, Natalia S Nemeria, William Furey and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Jieyu ZhouFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102.
Luying YangFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102.
Oliver Ozohanicsthe Department of Medical Biochemistry, MTA-SE Laboratory for Neurobiochemistry, Semmelweis University, 27-29 Tuzolto Utca, Budapest H-1094, Hungary.
Xu ZhangFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102.
Junjie WangFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102.
Attila Ambrusthe Department of Medical Biochemistry, MTA-SE Laboratory for Neurobiochemistry, Semmelweis University, 27-29 Tuzolto Utca, Budapest H-1094, Hungary.
Palaniappa Arjunanthe Biocrystallography Laboratory, Veterans Affairs Medical Center, Pittsburgh, Pennsylvania 15240.
Roman BrukhFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102.
Natalia S NemeriaFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, nemeria@newark.rutgers.edu.
William Fureythe Biocrystallography Laboratory, Veterans Affairs Medical Center, Pittsburgh, Pennsylvania 15240.ORCID 0000-0002-7788-0689
Frank JordanFrom the Department of Chemistry, Rutgers, The State University of New Jersey, Newark, New Jersey 07102, frjordan@newark.rutgers.edu.ORCID 0000-0003-1354-718X
Rutgers, The State University of New Jersey · USSemmelweis University · HUUniversity of Pittsburgh · US

Funding

Pyruvate Dehydrogenase Assembly, Structure & FunctionR01GM121469 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FUREY, WILLIAM F · 2017 to 2020
$1.2M
A Mass Spectrometry System for Quantitative ProteomicsS10OD016400 · OD · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI LOBEL, PETER · 2014 to 2014
$561k
Mechanistic Issues Related to Aging on Human 2-Oxoglutarate Dehydrogenase ComplexR15GM116077 · NIGMS · RUTGERS THE STATE UNIV OF NJ NEWARK · PI JORDAN, FRANK · 2015 to 2015
$369k
NIGMS NIH HHS R01 GM121469NIGMS NIH HHS R15 GM116077NIH HHS S10 OD016400
6 · The paper itself

Abstract

The human 2-oxoglutaric acid dehydrogenase complex (hOGDHc) plays a pivotal role in the tricarboxylic acid (TCA) cycle, and its diminished activity is associated with neurodegenerative diseases. The hOGDHc comprises three components, hE1o, hE2o, and hE3, and we recently reported functionally active E1o and E2o components, enabling studies on their assembly. No atomic-resolution structure for the hE2o component is currently available, so here we first studied the interactions in the binary subcomplexes (hE1o-hE2o, hE1o-hE3, and hE2o-hE3) to gain insight into the strength of their interactions and to identify the interaction loci in them. We carried out multiple physico-chemical studies, including fluorescence, hydrogen-deuterium exchange MS (HDX-MS), and chemical cross-linking MS (CL-MS). Our fluorescence studies suggested a strong interaction for the hE1o-hE2o subcomplex, but a much weaker interaction in the hE1o-hE3 subcomplex, and failed to identify any interaction in the hE2o-hE3 subcomplex. The HDX-MS studies gave evidence for interactions in the hE1o-hE2o and hE1o-hE3 subcomplexes comprising full-length components, identifying: (i) the N-terminal region of hE1o, in particular the two peptides

Indexed as

Amino Acid SequenceBinding SitesHumansKetoglutarate Dehydrogenase ComplexMass SpectrometryModels, MolecularProtein Conformation, alpha-HelicalProtein Interaction MappingKetoglutarate Dehydrogenase Complexchemical cross-linking MSdehydrogenasehuman 2-oxoglutarate dehydrogenase complexhydrogen exchange mass spectrometryisothermal titration calorimetry (ITC)mass spectrometry (MS)neurodegeneration, oxidative stressprotein complex interaction locisite-selected fluorescent labelingtricarboxylic acid cycle (TCA cycle) (Krebs cycle)

Identifiers

PMID30323066
PMCPMC6302161
OpenAlexW2896729770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.