Evidence map›Paper›PMID 30322920›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Single-molecule DNA-mapping and whole-genome sequencing of individual cells.

Rodolphe Marie, Jonas N Pedersen, Loic Bærlocher, Kamila Koprowska, Marie Pødenphant, Céline Sabatel, Maksim Zalkovskij, Andrej Mironov, Brian Bilenberg, Neil Ashley and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. DNA Manipulation and Single-Molecule Imaging.Molecules (Basel, Switzerland) · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Rodolphe MarieDepartment of Micro- and Nanotechnology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; rcwm@nanotech.dtu.dk.ORCID 0000-0002-8338-1990
Jonas N PedersenDepartment of Micro- and Nanotechnology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.ORCID 0000-0001-7642-8212
Loic BærlocherFasteris SA, CH-1228 Plan-les-Ouates, Switzerland.
Kamila KoprowskaCancer and Immunogenetics Laboratory, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom.
Marie PødenphantDepartment of Micro- and Nanotechnology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
Céline SabatelDiagenode SA, 4102 Seraing (Ougrée), Belgium.
Maksim ZalkovskijNIL Technology ApS, 2800 Kongens Lyngby, Denmark.
Andrej MironovNIL Technology ApS, 2800 Kongens Lyngby, Denmark.
Brian BilenbergNIL Technology ApS, 2800 Kongens Lyngby, Denmark.
Neil AshleyCancer and Immunogenetics Laboratory, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom.
Henrik FlyvbjergDepartment of Micro- and Nanotechnology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.ORCID 0000-0002-1691-9367
Walter F BodmerCancer and Immunogenetics Laboratory, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom.
Anders KristensenDepartment of Micro- and Nanotechnology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
Kalim U MirXGenomes, Boston, MA 02134.ORCID 0000-0003-4344-4245
Technical University of Denmark · DKNIL Technology (Denmark) · DKUniversity of Oxford · GBDiagenode (Belgium) · BE

Funding

Medical Research Council MR/M00919X/1
6 · The paper itself

Abstract

To elucidate cellular diversity and clonal evolution in tissues and tumors, one must resolve genomic heterogeneity in single cells. To this end, we have developed low-cost, mass-producible micro-/nanofluidic chips for DNA extraction from individual cells. These chips have modules that collect genomic DNA for sequencing or map genomic structure directly, on-chip, with denaturation-renaturation (D-R) optical mapping [Marie R, et al. (2013)

Indexed as

Cell Line, TumorChromosome MappingChromosomes, Human, Pair 19Chromosomes, Human, Pair 4Clonal EvolutionColorectal NeoplasmsDNAGenomeGenomicsHigh-Throughput Nucleotide SequencingHumansSequence Analysis, DNASequence DeletionDNADNAnanofluidicsoptical mappingsequencingsingle cell

Identifiers

PMID30322920
PMCPMC6217438
OpenAlexW2897583635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.