Evidence map›Paper›PMID 30321412›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2019

Developmental Regulation of Nuclear Factor Erythroid-2 Related Factors (nrfs) by AHR1b in Zebrafish (Danio rerio).

Alexandra Ulin, Jake Henderson, Minh-Tam Pham, James Meyo, Yuying Chen, Sibel I Karchner, Jared V Goldstone, Mark E Hahn, Larissa M Williams

Open access · bronzeAbstract read
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A Review of the Functional Roles of the Zebrafish Aryl Hydrocarbon Receptors.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Alexandra UlinDepartment of biology, Bates College, Lewiston, Maine 04240.
Jake HendersonDepartment of biology, Bates College, Lewiston, Maine 04240.
Minh-Tam PhamDepartment of biology, Bates College, Lewiston, Maine 04240.
James MeyoDepartment of biology, Bates College, Lewiston, Maine 04240.
Yuying ChenDepartment of biology, Bates College, Lewiston, Maine 04240.
Sibel I KarchnerDepartment of biology, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Jared V GoldstoneDepartment of biology, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Mark E HahnDepartment of biology, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Larissa M WilliamsDepartment of biology, Bates College, Lewiston, Maine 04240.
Bates College · USWoods Hole Oceanographic Institution · US

Funding

The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Frederic Xavier Bonnet · 2012 to 2026
$60.0M
AHR Signaling in Mammalian and Non-Mammalian ModelsR01ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1999 to 2014
$4.1M
Mechanisms of Embryo Response to Oxidative StressR01ES016366 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 2009 to 2013
$1.9M
Role of Nrf Proteins in Embryonic Development and the Response to Developmental ToxicantsR56ES028728 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 2018 to 2018
$162k
Transcription Factor Cross-Talk in Developmental ToxicityF32ES019832 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI WILLIAMS, LARISSA · 2011 to 2012
$90k
NIEHS NIH HHS F32 ES019832NIEHS NIH HHS R01 ES006272NIEHS NIH HHS R01 ES016366NIEHS NIH HHS R56 ES028728NIGMS NIH HHS P20 GM103423
6 · The paper itself

Abstract

Interactions between regulatory pathways allow organisms to adapt to their environment and respond to stress. One interaction that has been recently identified occurs between the aryl hydrocarbon receptor (AHR) and the nuclear factor erythroid-2 related factor (NRF) family. Each transcription factor regulates numerous downstream genes involved in the cellular response to toxicants and oxidative stress; they are also implicated in normal developmental pathways. The zebrafish model was used to explore the role of AHR regulation of nrf genes during development and in response to toxicant exposure. To determine if AHR1b is responsible for transcriptional regulation of 6 nrf genes during development, a loss-of-function experiment using morpholino-modified oligonucleotides was conducted followed by a chromatin immunoprecipitation study at the beginning of the pharyngula period (24 h postfertilization). The expression of nrf1a was AHR1b dependent and its expression was directly regulated through specific XREs in its cis-promoter. However, nrf1a expression was not altered by exposure to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD), a toxicant and prototypic AHR agonist. The expression of nrf1b, nrf2a, and nfe2 was induced by TCDD, and AHR1b directly regulated their expression by binding to cis-XRE promoter elements. Last, nrf2b and nrf3 were neither induced by TCDD nor regulated by AHR1b. These results show that AHR1b transcriptionally regulates nrf genes under toxicant modulation via binding to specific XREs. These data provide a better understanding of how combinatorial molecular signaling potentially protects embryos from embryotoxic events following toxicant exposure.

Indexed as

Gene Expression Regulation, DevelopmentalZebrafishAnimalsEmbryonic DevelopmentEmbryo, NonmammalianNF-E2-Related Factor 2Polychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonSignal TransductionZebrafish ProteinsAhr1b protein, zebrafishnfe2l2a protein, zebrafishNF-E2-Related Factor 2Polychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonZebrafish Proteins

Identifiers

PMID30321412
PMCPMC6358246
OpenAlexW2895965762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.