Evidence map›Paper›PMID 30321343›Full record

ArticleGenome biology and evolution2018

The Genomic Basis of Tumor Regression in Tasmanian Devils (Sarcophilus harrisii).

Mark J Margres, Manuel Ruiz-Aravena, Rodrigo Hamede, Menna E Jones, Matthew F Lawrance, Sarah A Hendricks, Austin Patton, Brian W Davis, Elaine A Ostrander, Hamish McCallum and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  5. Intergenomic signatures of coevolution between Tasmanian devils and an infectious cancer.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  13. Contemporary and historical selection in Tasmanian devils (Proceedings. Biological sciences · 2021
    Article
  14. Article
  15. Darwin, the devil, and the management of transmissible cancers.Conservation biology : the journal of the Society for Conservation Biology · 2021
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  16. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Mark J MargresSchool of Biological Sciences, Washington State University.
Manuel Ruiz-AravenaSchool of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia.
Rodrigo HamedeSchool of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia.
Menna E JonesSchool of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia.
Matthew F LawranceSchool of Biological Sciences, Washington State University.
Sarah A HendricksDepartment of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow.
Austin PattonSchool of Biological Sciences, Washington State University.
Brian W DavisDepartment of Veterinary Integrative Biosciences, Texas A&M University, College Station.
Elaine A OstranderCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Hamish McCallumSchool of Environment, Griffith University, Nathan, Queensland, Australia.
Paul A HohenloheDepartment of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow.
Andrew StorferSchool of Biological Sciences, Washington State University.
Washington State University · USUniversity of Idaho · USUniversity of Tasmania · AUDeakin University · AUGriffith University · AUNational Human Genome Research Institute · USNational Institutes of Health · US

Funding

Comparative Mammalian GenomicsZIAHG200377 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI OSTRANDER, ELAINE · 2012 to 2025
$24.8M
Genomics Resources Core (GRC)P30GM103324 · NIGMS · UNIVERSITY OF IDAHO · PI FORNEY, LARRY J · 2013 to 2017
$5.0M
Evolution of cancer transmissionR01GM126563 · NIGMS · WASHINGTON STATE UNIVERSITY · PI STORFER, ANDREW T · 2017 to 2020
$2.3M
NIGMS NIH HHS P30 GM103324NIGMS NIH HHS R01 GM126563
6 · The paper itself

Abstract

Understanding the genetic basis of disease-related phenotypes, such as cancer susceptibility, is crucial for the advancement of personalized medicine. Although most cancers are somatic in origin, a small number of transmissible cancers have been documented. Two such cancers have emerged in the Tasmanian devil (Sarcophilus harrisii) and now threaten the species with extinction. Recently, cases of natural tumor regression in Tasmanian devils infected with the clonally contagious cancer have been detected. We used whole-genome sequencing and FST-based approaches to identify the genetic basis of tumor regression by comparing the genomes of seven individuals that underwent tumor regression with those of three infected individuals that did not. We found three highly differentiated candidate genomic regions containing several genes related to immune response and/or cancer risk, indicating that the genomic basis of tumor regression was polygenic. Within these genomic regions, we identified putative regulatory variation in candidate genes but no nonsynonymous variation, suggesting that natural tumor regression may be driven, at least in part, by differential host expression of key loci. Comparative oncology can provide insight into the genetic basis of cancer risk, tumor development, and the pathogenicity of cancer, particularly due to our limited ability to monitor natural, untreated tumor progression in human patients. Our results support the hypothesis that host immune response is necessary for triggering tumor regression, providing candidate genes that may translate to novel treatments in human and nonhuman cancers.

Indexed as

AnimalsFemaleGenomic Structural VariationINDEL MutationMaleMarsupialiaMultifactorial InheritanceNeoplasm Regression, SpontaneousNeoplasmsPolymorphism, Single NucleotideRegulatory Elements, Transcriptional

Identifiers

PMID30321343
PMCPMC6251476
OpenAlexW2897559527

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.