Evidence map›Paper›PMID 30318497›Full record

ArticleMicrobes and environments2018

Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus.

Syun-Ichi Urayama, Yoshihiro Takaki, Takuro Nunoura, Norio Miyamoto

Open access · diamondAbstract read
In one paragraph

Article in Microbes and environments, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. The Expanding Diversity of Viruses from Extreme Environments.International journal of molecular sciences · 2024
    Review
  2. Review
  3. Diverged and Active Partitiviruses in Lichen.Frontiers in microbiology · 2020
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Syun-Ichi UrayamaResearch and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).
Yoshihiro TakakiResearch and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).
Takuro NunouraResearch and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).
Norio MiyamotoResearch and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).
Japan Agency for Marine-Earth Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The deep sea, the largest biosphere on Earth, nurtures a large variety of animals. However, no virus that infects deep-sea animals has been found. We herein report the first full-length RNA viral genome sequence identified from the deep-sea animal, Osedax japonicus, called Osedax japonicus RNA virus 1 (OjRV1). This sequence showed the highest amino acid sequence similarity to a virus of the family Togaviridae. However, the phylogenetic position and genome structure of OjRV1 differed from those of viruses in Togaviridae. These results suggest that OjRV1 belongs to a new virus family and that deep-sea animals may associate with new viruses.

Indexed as

AnimalsBase CompositionBase SequenceGenome SizeGenome, ViralOceans and SeasOpen Reading FramesPhylogenyPolychaetaRNA, Double-StrandedRNA VirusesRNA, Double-Strandeddeep-sea animaldsRNARNA virus

Identifiers

PMID30318497
PMCPMC6308001
OpenAlexW2895787524

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.