Evidence map›Paper›PMID 30318267›Full record

ReviewTrends in biochemical sciences2018

Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry.

Zhuo A Chen, Juri Rappsilber

Open access · hybridAbstract readReview
In one paragraph

Review in Trends in biochemical sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Crosslinking mass spectrometry: A link between structural biology and systems biology.Protein science : a publication of the Protein Society · 2021
    Review
  12. SARS-CoV-2 nucleocapsid protein forms condensates with viral genomic RNA.bioRxiv : the preprint server for biology · 2021
    Article
  13. Review
  14. The spatial network of skeletal proteins in a stony coral.Journal of the Royal Society, Interface · 2021
    Article
  15. Quantitative Cross-Linking of Proteins and Protein Complexes.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Zhuo A ChenBioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
Juri RappsilberBioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. Electronic address: juri.rappsilber@tu-berlin.de.
Technische Universität Berlin · DEWellcome Centre for Cell Biology · GB

Funding

Wellcome Trust 103139Wellcome Trust 103139/Z/13/ZWellcome Trust 203149
6 · The paper itself

Abstract

The dynamics of protein structures and their interactions are responsible for many cellular processes. The rearrangements and interactions of proteins, which are often transient, occur in solution and may require a biological environment that is difficult to maintain in traditional structural biological approaches. Quantitative crosslinking/mass spectrometry (QCLMS) has emerged as an excellent method to fill this gap. Numerous recent applications of the technique have demonstrated that protein dynamics can now be studied in solution at sufficient resolution to gain valuable biological insights, suggesting that extending these investigations to native environments is possible. These breakthroughs have been based on the maturation of CLMS at large, and its recent fusion with quantitative proteomics. We provide here an overview of the current state of the technique, the available workflows and their applications, and remaining challenges.

Indexed as

Protein ConformationAnimalsCross-Linking ReagentsHumansMass SpectrometryProteinsProteomicsCross-Linking ReagentsProteinscrosslinking/mass spectrometryinteractionsprotein conformational changesprotein dynamicsquantitation

Identifiers

PMID30318267
PMCPMC6240160
OpenAlexW2896734847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.