Evidence map›Paper›PMID 30315815›Full record

ArticleJournal of theoretical biology2019

The role of telomere shortening in carcinogenesis: A hybrid stochastic-deterministic approach.

Ignacio A Rodriguez-Brenes, Natalia L Komarova, Dominik Wodarz

Abstract read
In one paragraph

Article in Journal of theoretical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ignacio A Rodriguez-BrenesDepartment of Mathematics, University of California, Irvine, California, United States; Department of Ecology and Evolutionary Biology, University of California, Irvine, California, United States. Electronic address: iarodrig@uci.edu.
Natalia L KomarovaDepartment of Mathematics, University of California, Irvine, California, United States; Department of Ecology and Evolutionary Biology, University of California, Irvine, California, United States.
Dominik WodarzDepartment of Mathematics, University of California, Irvine, California, United States; Department of Ecology and Evolutionary Biology, University of California, Irvine, California, United States.
University of California, Irvine · US

Funding

Aspirin and Cancer Prevention in Lynch Syndrome: From Cell to Population DataU01CA187956 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI GOEL, AJAY, WODARZ, DOMINIK F · 2014 to 2018
$2.7M
NCI NIH HHS U01 CA187956
6 · The paper itself

Abstract

Genome instability is a characteristic of most cancers, contributing to the acquisition of genetic alterations that drive tumor progression. One important source of genome instability is linked to telomere dysfunction in cells with critically short telomeres that lack p53-mediated surveillance of genomic integrity. Here we research the probability that cancer emerges through an evolutionary pathway that includes a telomere-induced phase of genome instability. To implement our models we use a hybrid stochastic-deterministic approach, which allows us to perform large numbers of simulations using biologically realistic population sizes and mutation rates, circumventing the traditional limitations of fully stochastic algorithms. The hybrid methodology should be easily adaptable to a wide range of evolutionary problems. In particular, we model telomere shortening and the acquisition of two mutations: Telomerase activation and p53 inactivation. We find that the death rate of unstable cells, and the number of cell divisions that p53 mutants can sustain beyond the normal senescence setpoint determine the likelihood that the first double mutant originates in a cell with telomere-induced instability. The model has applications to an influential telomerase-null mouse model and p16 silenced human cells. We end by discussing algorithmic performance and a measure for the accuracy of the hybrid approximation.

Indexed as

AlgorithmsAnimalsCarcinogenesisCyclin-Dependent Kinase Inhibitor p16Genomic InstabilityHumansMiceTelomeraseTelomere ShorteningCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16TelomeraseCancerComputational EvolutionHybrid stochasticdeterministic methodsTelomeres

Identifiers

PMID30315815
PMCPMC6234035
OpenAlexW2950930859

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.