ArticleGenes & genomics2018
Transcriptome profiling of rubber tree (Hevea brasiliensis) discovers candidate regulators of the cold stress response.
Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 62 citations in OpenAlex.
- Genome-wide identification and cold stress expression of inducer of CBF expression (ICE) transcription factors in Taraxacum kok-saghyz.Functional & integrative genomics · 2026Article
- Expression profiles of transcription factors and aquaporins suggest putative roles in rubber biosynthesis regulation and drought stress adaptation in guayule.Scientific reports · 2026Article
- Molecular resilience: genetic analysis of multiple-stress tolerance (osmotic, salinity, cold and heat) during potato (Frontiers in plant science · 2026Article
- Transcriptomic Analysis of Differential Gene Expression inPlants (Basel, Switzerland) · 2025Article
- Multifunctional Transcription Factor YABBY6 Regulates Morphogenesis, Drought and Cold Stress Responses in Rice.Rice (New York, N.Y.) · 2024Article
- Analysis of the Mechanism of Wood Vinegar and Butyrolactone Promoting Rapeseed Growth and Improving Low-Temperature Stress Resistance Based on Transcriptome and Metabolomics.International journal of molecular sciences · 2024Article
- Transcriptome-Based Screening of Candidate Low-Temperature-Associated Genes and Analysis of theInternational journal of molecular sciences · 2024Article
- Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29.Plant communications · 2023Article
- Effects of Donor Ages and Propagation Methods on Seedling Growth ofInternational journal of molecular sciences · 2023Article
- Genome-Wide Characterization, Identification and Expression Profile of MYB Transcription Factor Gene Family during Abiotic and Biotic Stresses in Mango (Plants (Basel, Switzerland) · 2022Article
- Genome-Wide Identification and Characterization ofFrontiers in plant science · 2022Article
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- Genome-wide identification, characterization, and functional analysis of lncRNAs inFrontiers in plant science · 2022Article
- Transcriptomics integrated with widely targeted metabolomics reveals the cold resistance mechanism inFrontiers in plant science · 2022Article
- Genome-wide identification of theFrontiers in plant science · 2022Article
- Transcriptome and Metabonomics Combined Analysis Revealed the Defense Mechanism Involved in Hydrogen-Rich Water-Regulated Cold Stress Response ofFrontiers in plant science · 2022Article
- Transcriptome Analysis Revealed a Cold Stress-Responsive Transcription Factor,Frontiers in plant science · 2022Article
- Transcriptome profiling of Malus sieversii under freezing stress after being cold-acclimated.BMC genomics · 2021Article
- Comparative analysis of latex transcriptomes reveals the potential mechanisms underlying rubber molecular weight variations between the Hevea brasiliensis clones RRIM600 and Reyan7-33-97.BMC plant biology · 2021Article
- De novo transcriptome assembly and comparative transcriptomic analysis provide molecular insights into low temperature stress response of Canarium album.Scientific reports · 2021Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
Abstract
Tropical plant rubber tree (Hevea brasiliensis) is the sole source of commercial natural rubber and low-temperature stress is the most important limiting factor for its cultivation. To characterize the gene expression profiles of H. brasiliensis under the cold stress and discover the key cold stress-induced genes. Three cDNA libraries, CT (control), LT2 (cold treatment at 4 °C for 2 h) and LT24 (cold treatment at 4 °C for 24 h) were constructed for RNA sequencing (RNA-Seq) and gene expression profiling. Quantitative real time PCR (qRT-PCR) was conducted to validate the RNA-Seq and gene differentially expression results. A total of 1457 and 2328 differentially expressed genes (DEGs) in LT2 and LT24 compared with CT were respectively detected. Most significantly enriched KEGG pathways included flavonoid biosynthesis, phenylpropanoid biosynthesis, plant hormone signal transduction, cutin, suberine and wax biosynthesis, Pentose and glucuronate interconversions, phenylalanine metabolism and starch and sucrose metabolism. A total of 239 transcription factors (TFs) were differentially expressed following 2 h or/and 24 h of cold treatment. Cold-response transcription factor families included ARR-B, B3, BES1, bHLH, C2H, CO-like, Dof, ERF, FAR1, G2-like, GRAS, GRF, HD-ZIP, HSF, LBD, MIKC-MADS, M-type MADS, MYB, MYB-related, NAC, RAV, SRS, TALE, TCP, Trihelix, WOX, WRKY, YABBY and ZF-HD. The genome-wide transcriptional response of rubber tree to the cold treatments were determined and a large number of DEGs were characterized including 239 transcription factors, providing important clues for further elucidation of the mechanisms of cold stress responses in rubber tree.
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