Evidence map›Paper›PMID 30315258›Full record

ArticleNature communications2018

ATRX, DAXX or MEN1 mutant pancreatic neuroendocrine tumors are a distinct alpha-cell signature subgroup.

Chang S Chan, Saurabh V Laddha, Peter W Lewis, Matthew S Koletsky, Kenneth Robzyk, Edaise Da Silva, Paula J Torres, Brian R Untch, Janet Li, Promita Bose and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed, 4 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 4 syntheses or guidelines pooled it, 222 citations in OpenAlex.

  1. Pooled it
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  10. Distinct Malignant Cell States and Myeloid Glutamate Signaling Associated with Aggressive Pancreatic Neuroendocrine Tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
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72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Chang S ChanRutgers Cancer Institute of New Jersey, New Brunswick, NJ, 08903, USA.
Saurabh V LaddhaRutgers Cancer Institute of New Jersey, New Brunswick, NJ, 08903, USA.ORCID http://orcid.org/0000-0002-8781-9478
Peter W LewisEpigenetics Theme, Wisconsin Institute for Discovery, University of Wisconsin, Madison, WI, USA.ORCID http://orcid.org/0000-0002-9816-7823
Matthew S KoletskyLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY, 10065, USA.
Kenneth RobzykDepartment of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA.
Edaise Da SilvaDepartment of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA.
Paula J TorresDepartment of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA.
Brian R UntchDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Janet LiDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Promita BoseDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Timothy A ChanDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID http://orcid.org/0000-0002-9265-0283
David S KlimstraDepartment of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA.
C David AllisLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, NY, 10065, USA.
Laura H TangDepartment of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY, 10065, USA. tangl@mskcc.org.
Memorial Sloan Kettering Cancer Center · USRockefeller University · USRutgers, The State University of New Jersey · USUniversity of Wisconsin–Madison · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Chang S Chan · 1997 to 2026
$94.5M
Supercomputing: Rutgers' Catalyst for Discovery at the Frontiers of MedicineS10OD012346 · OD · RBHS-NEW JERSEY MEDICAL SCHOOL · PI MICHELSON, LESLIE PAUL · 2015 to 2015
$1.7M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA072720NIH HHS S10 OD012346
6 · The paper itself

Abstract

The commonly mutated genes in pancreatic neuroendocrine tumors (PanNETs) are ATRX, DAXX, and MEN1. We genotyped 64 PanNETs and found 58% carry ATRX, DAXX, and MEN1 mutations (A-D-M mutant PanNETs) and this correlates with a worse clinical outcome than tumors carrying the wild-type alleles of all three genes (A-D-M WT PanNETs). We performed RNA sequencing and DNA-methylation analysis to reveal two distinct subgroups with one consisting entirely of A-D-M mutant PanNETs. Two genes differentiating A-D-M mutant from A-D-M WT PanNETs were high ARX and low PDX1 gene expression with PDX1 promoter hyper-methylation in the A-D-M mutant PanNETs. Moreover, A-D-M mutant PanNETs had a gene expression signature related to that of alpha-cells (FDR q-value < 0.009) of pancreatic islets including increased expression of HNF1A and its transcriptional target genes. This gene expression profile suggests that A-D-M mutant PanNETs originate from or transdifferentiate into a distinct cell type similar to alpha cells.

Indexed as

Adaptor Proteins, Signal TransducingCo-Repressor ProteinsDNA MethylationHumansImmunohistochemistryMolecular ChaperonesNeuroendocrine TumorsNuclear ProteinsPromoter Regions, GeneticProspective StudiesProto-Oncogene ProteinsRetrospective StudiesX-linked Nuclear ProteinAdaptor Proteins, Signal TransducingATRX protein, humanCo-Repressor ProteinsDAXX protein, humanMEN1 protein, humanMolecular ChaperonesNuclear ProteinsProto-Oncogene ProteinsX-linked Nuclear Protein

Identifiers

PMID30315258
PMCPMC6185985
OpenAlexW2952011786

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.