Evidence map›Paper›PMID 30315245›Full record

ArticleScientific reports2018

A dimeric fluorescent protein yields a bright, red-shifted GEVI capable of population signals in brain slice.

Bumjun Yi, Bok Eum Kang, Sungmoo Lee, Sophie Braubach, Bradley J Baker

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  7. Review
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  10. Article
  11. Genetic voltage indicators.BMC biology · 2019
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bumjun YiThe Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea.
Bok Eum KangThe Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea.
Sungmoo LeeThe Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea.
Sophie BraubachThe Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea.
Bradley J BakerThe Center for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea. bradley.baker19@gmail.com.

Funding

New approaches for better protein voltage sensorsU01NS099691 · NINDS · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2016 to 2018
$2.1M
Korea Institute of Science and Technology (KIST) 2E26170Korea Institute of Science and Technology (KIST) 2E26190NINDS NIH HHS U01 NS099691U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) U01NS099691
6 · The paper itself

Abstract

A bright, red-shifted Genetically Encoded Voltage Indicator (GEVI) was developed using a modified version of the fluorescent protein, tdTomato. Dimerization of the fluorescent domain for ArcLight-type GEVIs has been shown to affect the signal size of the voltage-dependent optical signal. For red-shifted GEVI development, tdTomato was split fusing a single dTomato chromophore to the voltage sensing domain. Optimization of the amino acid length and charge composition of the linker region between the voltage sensing domain and the fluorescent protein resulted in a probe that is an order of magnitude brighter than FlicR1 at a resting potential of -70 mV and exhibits a ten-fold larger change in fluorescence (ΔF) upon 100 mV depolarization of the plasma membrane in HEK 293 cells. Unlike ArcLight, the introduction of charged residues to the exterior of dTomato did not substantially improve the dynamic range of the optical signal. As a result, this new GEVI, Ilmol, yields a 3-fold improvement in the signal-to-noise ratio compared to FlicR1 despite a smaller fractional change in fluorescence of 4% per 100 mV depolarization of the plasma membrane. Ilmol expresses well in neurons resolving action potentials in neuronal cultures and reporting population signals in mouse hippocampal acute brain slice recordings. Ilmol is the brightest red-shifted GEVI to date enabling imaging with 160-fold less light than Archon1 for primary neuron recordings (50 mW/cm

Indexed as

Protein MultimerizationAmino Acid SequenceAnimalsBrainGenes, ReporterHEK293 CellsHippocampusHumansLuminescent ProteinsMaleMiceModels, MolecularMutationNeuronsOptical ImagingProtein ConformationLuminescent Proteins

Identifiers

PMID30315245
PMCPMC6185910

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.