Evidence map›Paper›PMID 30315240›Full record

ArticleNature communications2018

Chemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex.

David R Calabrese, Xiang Chen, Elena C Leon, Snehal M Gaikwad, Zaw Phyo, William M Hewitt, Stephanie Alden, Thomas A Hilimire, Fahu He, Aleksandra M Michalowski and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. Review
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  8. Light-Activated Molecules Targeting G-Quadruplex Nucleic Acids.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Harnessing Light for G-Quadruplex Modulation: Dual Isomeric Effects of anThe journal of physical chemistry letters · 2024
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

David R CalabreseChemical Biology Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Xiang ChenStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Elena C LeonLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Snehal M GaikwadLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Zaw PhyoLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
William M HewittChemical Biology Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Stephanie AldenChemical Biology Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Thomas A HilimireChemical Biology Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Fahu HeStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Aleksandra M MichalowskiLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
John K SimmonsLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Lindsey B SaundersChemical Biology Laboratory, National Cancer Institute, Frederick, MD, 21702, USA.
Shuling ZhangLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Daniel ConnorsLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.
Kylie J WaltersStructural Biophysics Laboratory, National Cancer Institute, Frederick, MD, 21702, USA. kylie.walters@nih.gov.
Beverly A MockLaboratory of Cancer Biology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA. mockb@mail.nih.gov.ORCID http://orcid.org/0000-0003-2479-4549
John S SchneeklothChemical Biology Laboratory, National Cancer Institute, Frederick, MD, 21702, USA. schneeklothjs@mail.nih.gov.ORCID http://orcid.org/0000-0001-7459-783X
National Cancer Institute · US

Funding

Ubiquitin signaling for protein degradationZIABC011490 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WALTERS, KYLIE · 2013 to 2025
$21.1M
Identification of Nucleic Acid Binding Small MoleculesZIABC011585 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SCHNEEKLOTH, JOHN · 2014 to 2025
$18.6M
Preclinical Testing of HDAC, mTOR and MYC InhibitorsZIABC011065 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MOCK, BEVERLY · 2009 to 2025
$10.6M
Myosin VI: a new ubiquitin receptorZIABC011627 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WALTERS, KYLIE · 2015 to 2025
$4.6M
Intramural NIH HHS ZIA BC011065Intramural NIH HHS ZIA BC011490Intramural NIH HHS ZIA BC011585U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1 ZIA BC011065U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1 ZIA BC011490
6 · The paper itself

Abstract

G-quadruplexes (G4s) are noncanonical DNA structures that frequently occur in the promoter regions of oncogenes, such as MYC, and regulate gene expression. Although G4s are attractive therapeutic targets, ligands capable of discriminating between different G4 structures are rare. Here, we describe DC-34, a small molecule that potently downregulates MYC transcription in cancer cells by a G4-dependent mechanism. Inhibition by DC-34 is significantly greater for MYC than other G4-driven genes. We use chemical, biophysical, biological, and structural studies to demonstrate a molecular rationale for the recognition of the MYC G4. We solve the structure of the MYC G4 in complex with DC-34 by NMR spectroscopy and illustrate specific contacts responsible for affinity and selectivity. Modification of DC-34 reveals features required for G4 affinity, biological activity, and validates the derived NMR structure. This work advances the design of quadruplex-interacting small molecules to control gene expression in therapeutic areas such as cancer.

Indexed as

G-QuadruplexesBinding SitesBlotting, WesternCell LineCell Line, TumorCell SurvivalHumansHydrogen BondingMagnetic Resonance SpectroscopyMolecular StructurePromoter Regions, GeneticProtein BindingProtein Structure, SecondaryProto-Oncogene Proteins c-mycStructure-Activity RelationshipSurface Plasmon ResonanceProto-Oncogene Proteins c-myc

Identifiers

PMID30315240
PMCPMC6185959
OpenAlexW2896637864

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.