Evidence map›Paper›PMID 30315202›Full record

ArticleScientific reports2018

Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment.

Hongtao Zhang, Lucy Gannon, Peter D Jones, Chelsea A Rundle, Kirsty L Hassall, Daniel J Gibbs, Michael J Holdsworth, Frederica L Theodoulou

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Label-Free Quantitative Proteomics Reveal the Involvement of PRT6 inInternational journal of molecular sciences · 2022
    Article
  6. Review
  7. Article
  8. Review
  9. Comparative transcriptome analysis reveals function of TERF1 in promoting seed germination.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  10. Review
  11. Article
  12. Article
  13. Conserved and Opposite Transcriptome Patterns during Germination inInternational journal of molecular sciences · 2020
    Article
  14. Article
  15. A simple and efficientPlant direct · 2020
    Article
  16. ThePlant direct · 2019
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Hongtao ZhangPlant Sciences Department, Rothamsted Research, Harpenden, AL5 2JQ, UK.ORCID http://orcid.org/0000-0002-4903-571X
Lucy GannonPlant Sciences Department, Rothamsted Research, Harpenden, AL5 2JQ, UK.
Peter D JonesSchool of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.ORCID http://orcid.org/0000-0002-6667-7562
Chelsea A RundlePlant Sciences Department, Rothamsted Research, Harpenden, AL5 2JQ, UK.
Kirsty L HassallComputational and Analytical Sciences Department, Rothamsted Research, Harpenden, AL5 2JQ, UK.
Daniel J GibbsSchool of Biosciences, University of Birmingham, Edgbaston, B15 2TT, UK.ORCID http://orcid.org/0000-0002-4100-6682
Michael J HoldsworthSchool of Biosciences, University of Nottingham, Loughborough, LE12 5RD, UK.
Frederica L TheodoulouPlant Sciences Department, Rothamsted Research, Harpenden, AL5 2JQ, UK. freddie.theodoulou@rothamsted.ac.uk.ORCID http://orcid.org/0000-0002-8306-0716
Rothamsted Research · GBUniversity of Nottingham · GBUniversity of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research Council (BBSRC) BB/J016276/1Biotechnology and Biological Sciences Research Council (BBSRC) BBS/E/C/000I0420
6 · The paper itself

Abstract

The Arg/N-end rule pathway of ubiquitin-mediated proteolysis has multiple functions throughout plant development, notably in the transition from dormant seed to photoautotrophic seedling. PROTEOLYSIS6 (PRT6), an N-recognin E3 ligase of the Arg/N-end rule regulates the degradation of transcription factor substrates belonging to Group VII of the Ethylene Response Factor superfamily (ERFVIIs). It is not known whether ERFVIIs are associated with all known functions of the Arg/N-end rule, and the downstream pathways influenced by ERFVIIs are not fully defined. Here, we examined the relationship between PRT6 function, ERFVIIs and ABA signalling in Arabidopsis seedling establishment. Physiological analysis of seedlings revealed that N-end rule-regulated stabilisation of three of the five ERFVIIs, RAP2.12, RAP2.2 and RAP2.3, controls sugar sensitivity of seedling establishment and oil body breakdown following germination. ABA signalling components ABA INSENSITIVE (ABI)4 as well as ABI3 and ABI5 were found to enhance ABA sensitivity of germination and sugar sensitivity of establishment in a background containing stabilised ERFVIIs. However, N-end rule regulation of oil bodies was not dependent on canonical ABA signalling. We propose that the N-end rule serves to control multiple aspects of the seed to seedling transition by regulation of ERFVII activity, involving both ABA-dependent and independent signalling pathways.

Indexed as

Gene Expression Regulation, PlantSignal TransductionArabidopsisArabidopsis ProteinsEctopic Gene ExpressionPlant DevelopmentSeedlingsArabidopsis Proteins

Identifiers

PMID30315202
PMCPMC6185960
OpenAlexW2896119791

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.