Evidence map›Paper›PMID 30314303›Full record

ArticleMarine drugs2018

Massive Gene Expansion and Sequence Diversification Is Associated with Diverse Tissue Distribution, Regulation and Antimicrobial Properties of Anti-Lipopolysaccharide Factors in Shrimp.

Gabriel Machado Matos, Paulina Schmitt, Cairé Barreto, Natanael Dantas Farias, Guilherme Toledo-Silva, Fanny Guzmán, Delphine Destoumieux-Garzón, Luciane Maria Perazzolo, Rafael Diego Rosa

Abstract read
In one paragraph

Article in Marine drugs, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  15. Anti-inflammatory activities of arthropod peptides: a systematic review.The journal of venomous animals and toxins including tropical diseases · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gabriel Machado MatosLaboratory of Immunology Applied to Aquaculture, Department of Cell Biology, Embryology and Genetics, Federal University of Santa Catarina, Florianópolis SC 88040-900, Brazil. gabrielmatos92@gmail.com.
Paulina SchmittLaboratorio de Genética e Inmunología Molecular, Instituto de Biología, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Valparaíso 2373223, Chile. paulina.schmitt@pucv.cl.
Cairé BarretoLaboratory of Immunology Applied to Aquaculture, Department of Cell Biology, Embryology and Genetics, Federal University of Santa Catarina, Florianópolis SC 88040-900, Brazil. cairebarreto@gmail.com.
Natanael Dantas FariasLaboratory of Immunology Applied to Aquaculture, Department of Cell Biology, Embryology and Genetics, Federal University of Santa Catarina, Florianópolis SC 88040-900, Brazil. natan.cbio@gmail.com.
Guilherme Toledo-SilvaDepartment of Cell Biology, Embryology and Genetics, Federal University of Santa Catarina, Florianópolis SC 88040-900, Brazil. guilherme.toledo@ufsc.br.
Fanny GuzmánNúcleo Biotecnología Curauma, Pontificia Universidad Católica de Valparaíso, Valparaíso 2373223, Chile. fanny.guzman@pucv.cl.
Delphine Destoumieux-GarzónInteractions Hôtes-Pathogènes-Environnements, Université de Montpellier, CNRS, Ifremer, Université de Perpignan Via Domitia, CEDEX 5, 34090 Montpellier, France. Delphine.Destoumieux.Garzon@ifremer.fr.ORCID 0000-0002-8793-9138
Luciane Maria PerazzoloLaboratory of Immunology Applied to Aquaculture, Department of Cell Biology, Embryology and Genetics, Federal University of Santa Catarina, Florianópolis SC 88040-900, Brazil. l.m.perazzolo@ufsc.br.ORCID 0000-0002-5539-4911
Rafael Diego RosaLaboratory of Immunology Applied to Aquaculture, Department of Cell Biology, Embryology and Genetics, Federal University of Santa Catarina, Florianópolis SC 88040-900, Brazil. rafael.d.rosa@ufsc.br.ORCID 0000-0002-4076-3163

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico MCTI/CNPq Universal 406530/2016-5Conselho Nacional de Desenvolvimento Científico e Tecnológico MEC/MCTI/CAPES/CNPq/FAPs PVE 401191/2014-1Coordenação de Aperfeiçoamento de Pessoal de Nível Superior CIMAR 1974/2014Fondo Nacional de Desarrollo Científico y Tecnológico 11150009
6 · The paper itself

Abstract

Anti-lipopolysaccharide factors (ALFs) are antimicrobial peptides with a central β-hairpin structure able to bind to microbial components. Mining sequence databases for ALFs allowed us to show the remarkable diversity of ALF sequences in shrimp. We found at least seven members of the ALF family (Groups A to G), including two novel Groups (F and G), all of which are encoded by different loci with conserved gene organization. Phylogenetic analyses revealed that gene expansion and subsequent diversification of the ALF family occurred in crustaceans before shrimp speciation occurred. The transcriptional profile of ALFs was compared in terms of tissue distribution, response to two pathogens and during shrimp development in

Indexed as

Amino Acid SequenceAnimalsAnti-Infective AgentsArthropod ProteinsHemocytesLipopolysaccharidesPenaeidaePhylogenySequence AlignmentTissue DistributionTranscription, GeneticAnti-Infective AgentsArthropod ProteinsLipopolysaccharidesanti-LPS factorantimicrobial activityantimicrobial peptidecrustaceanfunctional diversityhost defense peptidehost‒microbe relationshipinvertebrate immunity

Identifiers

PMID30314303
PMCPMC6213531

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.