Evidence map›Paper›PMID 30311382›Full record

ArticleHuman mutation2018

Evidence-based assessments of clinical actionability in the context of secondary findings: Updates from ClinGen's Actionability Working Group.

Elizabeth M Webber, Jessica Ezzell Hunter, Leslie G Biesecker, Adam H Buchanan, Elizabeth V Clarke, Erin Currey, Orit Dagan-Rosenfeld, Kristy Lee, Noralane M Lindor, Christa Lese Martin and 14 more

Abstract read
In one paragraph

Article in Human mutation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Quality assurance within the context of genome diagnostics (a german perspective).Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. A practical approach to the genomics of kidney disorders.Pediatric nephrology (Berlin, Germany) · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Elizabeth M WebberCenter for Health Research, Kaiser Permanente Northwest, Portland, Oregon.ORCID 0000-0002-0128-133X
Jessica Ezzell HunterCenter for Health Research, Kaiser Permanente Northwest, Portland, Oregon.
Leslie G BieseckerMedical Genomics and Metabolic Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Adam H BuchananGenomic Medicine Institute, Geisinger, Danville, Pennsylvania.
Elizabeth V ClarkeCenter for Health Research, Kaiser Permanente Northwest, Portland, Oregon.
Erin CurreyDivision of Genomics and Society, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Orit Dagan-RosenfeldDepartment of Genetics, Stanford University, Stanford, California.
Kristy LeeDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina.
Noralane M LindorDepartment of Health Science Research, Mayo Clinic Arizona, Scottsdale, Arizona.
Christa Lese MartinAutism & Developmental Medicine Institute, Geisinger, Danville, Pennsylvania.
Aleksandar MilosavljevicDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Kathleen F MittendorfCenter for Health Research, Kaiser Permanente Northwest, Portland, Oregon.
Kristin R MuessigCenter for Health Research, Kaiser Permanente Northwest, Portland, Oregon.
Julianne M O'DanielDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina.
Ronak Y PatelDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0001-8111-7363
Erin M RamosDivision of Genomic Medicine, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Shannon RegoInstitute for Human Genetics, University of California, San Francisco, San Francisco, California.
Anne M SlavotinekDepartment of Pediatrics, University of California, San Francisco, San Francisco, California.
Nara Lygia M SobrieraMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Meredith A WeaverAmerican College of Medical Genetics and Genomics, Bethesda, Maryland.
Marc S WilliamsGenomic Medicine Institute, Geisinger, Danville, Pennsylvania.
James P EvansDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina.
Katrina A B GoddardCenter for Health Research, Kaiser Permanente Northwest, Portland, Oregon.
ClinGen Resource

Funding

The Clinical Genome Resource – Advancing genomic medicine through biocuration and expert assessment of genes and variants at scaleU24HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JONATHAN S BERG, Jessica Ezzell Hunter · 2021 to 2026
$30.0M
Resource ProjectU41HG006834 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI REHM, HEIDI L · 2013 to 2020
$26.9M
North Carolina Clinical Genomic Evaluation by Next-gen Exome Sequencing 2U01HG006487 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S, POWELL, BRADFORD C. · 2012 to 2021
$22.7M
The Future of PharmGKB Funding Under NHGRIU41HG009649 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL · 2017 to 2020
$13.4M
The Clinical Genome Resource - Expert Curation and EHR IntegrationU41HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S · 2017 to 2020
$13.3M
Clinically Relevant Genome Variation DatabaseU01HG007436 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, PLON, SHARON E. · 2013 to 2016
$10.5M
A Knowledge Base for Clinically Relevant Genes and VariantsU01HG007437 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S, EVANS, JAMES PHILIP · 2013 to 2016
$9.0M
NCI NIH HHS HHSN261200800001ENHGRI NIH HHS U01 HG006487NHGRI NIH HHS U01 HG007436NHGRI NIH HHS U01 HG007437NHGRI NIH HHS U24 HG009650NHGRI NIH HHS U41 HG006834NHGRI NIH HHS U41 HG009649NHGRI NIH HHS U41 HG009650
6 · The paper itself

Abstract

The use of genome-scale sequencing allows for identification of genetic findings beyond the original indication for testing (secondary findings). The ClinGen Actionability Working Group's (AWG) protocol for evidence synthesis and semi-quantitative metric scoring evaluates four domains of clinical actionability for potential secondary findings: severity and likelihood of the outcome, and effectiveness and nature of the intervention. As of February 2018, the AWG has scored 127 genes associated with 78 disorders (up-to-date topics/scores are available at www.clinicalgenome.org). Scores across these disorders were assessed to compare genes/disorders recommended for return as secondary findings by the American College of Medical Genetics and Genomics (ACMG) with those not currently recommended. Disorders recommended by the ACMG scored higher on outcome-related domains (severity and likelihood), but not on intervention-related domains (effectiveness and nature of the intervention). Current practices indicate that return of secondary findings will expand beyond those currently recommended by the ACMG. The ClinGen AWG evidence reports and summary scores are not intended as classifications of actionability, rather they provide a resource to aid decision makers as they determine best practices regarding secondary findings. The ClinGen AWG is working with the ACMG Secondary Findings Committee to update future iterations of their secondary findings list.

Indexed as

Databases, GeneticExomeGenetic TestingGenetic VariationGenome, HumanHigh-Throughput Nucleotide SequencingHumansclinical utilityexome sequencinggenome sequencingincidental findingssecondary findings

Identifiers

PMID30311382
PMCPMC6211797

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.