Evidence map›Paper›PMID 30311371›Full record

ArticleHuman mutation2018

ClinGen's GenomeConnect registry enables patient-centered data sharing.

Juliann M Savatt, Danielle R Azzariti, W Andrew Faucett, Steven Harrison, Jennifer Hart, Brandi Kattman, Melissa J Landrum, David H Ledbetter, Vanessa Rangel Miller, Emily Palen and 7 more

Abstract read
In one paragraph

Article in Human mutation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. The Brain Gene Registry: a data snapshot.Journal of neurodevelopmental disorders · 2024
    Article
  12. Review
  13. Review
  14. Clinical variants paired with phenotype: A rich resource for brain gene curation.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Clinical validity assessment of genes frequently tested on intellectual disability/autism sequencing panels.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
    Article
  19. Establishing the Medical Actionability of Genomic Variants.Annual review of genomics and human genetics · 2022
    Review
  20. HGG advances · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Juliann M SavattAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.ORCID 0000-0001-6444-1962
Danielle R AzzaritiLaboratory for Molecular Medicine, Partners Personalized Medicine, Boston, Massachusetts.ORCID 0000-0002-2635-9172
W Andrew FaucettAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.ORCID 0000-0003-3051-3256
Steven HarrisonLaboratory for Molecular Medicine, Partners Personalized Medicine, Boston, Massachusetts.ORCID 0000-0002-9614-9111
Jennifer HartNational Center for Biotechnology Information, Bethesda, Maryland.
Brandi KattmanNational Center for Biotechnology Information, Bethesda, Maryland.
Melissa J LandrumNational Center for Biotechnology Information, Bethesda, Maryland.ORCID 0000-0003-1914-2749
David H LedbetterAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.ORCID 0000-0001-8934-4210
Vanessa Rangel MillerInvitae, San Francisco, California.
Emily PalenAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.
Heidi L RehmLaboratory for Molecular Medicine, Partners Personalized Medicine, Boston, Massachusetts.ORCID 0000-0002-6025-0015
Jud RhodeInvitae, San Francisco, California.
Stefanie TurnerAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.
Jo Anne VidalInvitae, San Francisco, California.
Karen E WainAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.ORCID 0000-0002-3711-7670
Erin Rooney RiggsAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.ORCID 0000-0002-6647-5493
Christa Lese MartinAutism & Developmental Medicine Institute, Geisinger, Lewisburg, Pennsylvania.ORCID 0000-0002-8071-5780

Funding

Resource ProjectU41HG006834 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI REHM, HEIDI L · 2013 to 2020
$26.9M
A Knowledge Base for Clinically Relevant Genes and VariantsU01HG007437 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S, EVANS, JAMES PHILIP · 2013 to 2016
$9.0M
NHGRI NIH HHS U01 HG007437NHGRI NIH HHS U41 HG006834
6 · The paper itself

Abstract

GenomeConnect, the NIH-funded Clinical Genome Resource (ClinGen) patient registry, engages patients in data sharing to support the goal of creating a genomic knowledge base to inform clinical care and research. Participant self-reported health information and genomic variants from genetic testing reports are curated and shared with public databases, such as ClinVar. There are four primary benefits of GenomeConnect: (1) sharing novel genomic data-47.9% of variants were new to ClinVar, highlighting patients as a genomic data source; (2) contributing additional phenotypic information-of the 52.1% of variants already in ClinVar, GenomeConnect provided enhanced case-level data; (3) providing a way for patients to receive variant classification updates if the reporting laboratory submits to ClinVar-97.3% of responding participants opted to receive such information and 13 updates have been identified; and (4) supporting connections with others, including other participants, clinicians, and researchers to enable the exchange of information and support-60.4% of participants have opted to partake in participant matching. Moving forward, ClinGen plans to increase patient-centric data sharing by partnering with other existing patient groups. By engaging patients, more information is contributed to the public knowledge base, benefiting both patients and the genomics community.

Indexed as

Databases, GeneticGenetic TestingGenetic VariationGenome, HumanGenomicsHumansInformation DisseminationClinGenClinVargenomic data sharingmatchmakingpatient registryvariant interpretation

Identifiers

PMID30311371
PMCPMC6188701

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.