Evidence map›Paper›PMID 30310750›Full record

ArticlePeerJ2018

Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances.

Rodrigo G Taketani, Marta A Moitinho, Tim H Mauchline, Itamar S Melo

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 26 citations in OpenAlex.

  1. Organic matter decay and bacterial community succession in mangroves under simulated climate change scenarios.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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  5. Application of extracellular polymers on soil communities exposed to oil and nickel contamination.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Rodrigo G TaketaniDepartment of Soil Sciences, "Luiz de Queiroz" College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil.
Marta A MoitinhoLaboratory of Environmental Microbiology, Embrapa Environment, Brazilian Agricultural Research Corporation-EMBRAPA, Jaguariuna, SP, Brazil.
Tim H MauchlineSustainable Agriculture Sciences, Rothamsted Research, Harpenden, United Kingdom.
Itamar S MeloLaboratory of Environmental Microbiology, Embrapa Environment, Brazilian Agricultural Research Corporation-EMBRAPA, Jaguariuna, SP, Brazil.
Brazilian Agricultural Research Corporation · BRRothamsted Research · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMangroves are important coastal ecosystems known for high photosynthetic productivity and the ability to support marine food chains through supply of dissolved carbon or particular organic matter. Most of the carbon found in mangroves is produced by its vegetation and is decomposed in root associated sediment. This process involves a tight interaction between microbial populations, litter chemical composition, and environmental parameters. Here, we study the complex interactions found during litter decomposition in mangroves by applying network analysis to metagenomic data.

methodsLeaves of three species of mangrove trees typically found in the southeast of Brazil (

resultsThe most common phyla were Proteobacteria (classes Gamma and Alphaproteobacteria) followed by Firmicutes (Clostridia and Bacilli). The most abundant protein clusters were associated with the metabolism of carbohydrates, amino acids, and proteins. Non-metric multidimensional scaling of the metagenomic data indicated that substrate (i.e., tree species) did not significantly select for a specific community. Both networks exhibited scale-free characteristics and small world structure due to the low mean shortest path length and high average clustering coefficient. These networks also had a low number of hub nodes most of which were module hubs. DISCUSSION: This study demonstrates that under different environmental pressures (i.e., plant species or mangrove location) the microbial community associated with the decaying material forms a robust and stable network.

Indexed as

Litter decompositionMangroveMetagenomeNetwork analysis

Identifiers

PMID30310750
PMCPMC6174875
OpenAlexW2895233099

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.